The New phytologist
Jun 1, 2025
Sap flow, a critical process in plant water use and ecosystem water cycles, is often measured using thermal dissipation probes (TDP) due to their ease of installation and continuous data collection. However, sap flow data frequently include noise, ou...
Plant physiology
May 30, 2025
Grana are fundamental structural units of the intricate chloroplast membrane network. Investigating their nanomorphology is essential for understanding photosynthetic efficiency regulation. Here, we present GRANA (Graphical Recognition and Analysis o...
Radiation protection dosimetry
May 27, 2025
In recent years, scientists have been trying to convert magnetic resonance imaging (MRI) images into computed tomography (CT) images for dose calculations while taking advantage of the benefits of MRI images. The main approaches for image conversion ...
Nucleic acids research
May 22, 2025
Correcting for confounding variables is often overlooked when computing RNA-RNA correlations, even though it can profoundly affect results. We introduce CorrAdjust, a method for identifying and correcting such hidden confounders. CorrAdjust selects a...
BMC bioinformatics
May 20, 2025
Single-cell RNA sequencing (scRNA-seq) enables high-resolution analysis of cellular heterogeneity, but dropout events, where gene expression is undetected in individual cells, present a significant challenge. We propose scMASKGAN, which transforms ma...
Analytical chemistry
May 20, 2025
The interpretation of proteomics data often relies on functional enrichment analysis, such as Gene Ontology (GO) enrichment, to uncover the biological functions of proteins, as well as the examination of protein expression patterns across data sets l...
BMC bioinformatics
May 18, 2025
Bacterial tracking is crucial for understanding the mechanisms governing motility, chemotaxis, cell division, biofilm formation, and pathogenesis. Although modern microscopy and computing have enabled the collection of large datasets, many existing t...
Studies in health technology and informatics
May 15, 2025
The expanded use of hospital information systems in recent decades offers possibilities to use data collected in the clinical routine not only for individual patient care, but also for medical research. For this purpose, it is important use standardi...
Studies in health technology and informatics
May 15, 2025
Since its introduction, federated learning (FL) has attracted a lot of attention in the medical field, but its actual application in healthcare organisations remains limited. Flower is a leading FL framework known for its good documentation and wide ...
Studies in health technology and informatics
May 15, 2025
Clinical routine data is a valuable resource for research and analysis in hospitals. Even though regulations allow access within a clinical system, decentralized research with up-to-date data remains a problem limited by privacy concerns. Synthetic d...