AIMC Topic: Vibrio cholerae

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Unsupervised Learning Approach for Comparing Multiple Transposon Insertion Sequencing Studies.

mSphere Feb 20, 2019
Transposon insertion sequencing (TIS) is a widely used technique for conducting genome-scale forward genetic screens in bacteria. However, few methods enable comparison of TIS data across multiple replicates of a screen or across independent screens,...
Genomics Cluster Analysis Unsupervised Machine Learning Principal Component Analysis Bacterial Proteins High-Throughput Nucleotide Sequencing DNA Transposable Elements Vibrio cholerae Mutagenesis, Insertional
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Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach.

BMC genomics Aug 22, 2017
BACKGROUND: Small RNAs (sRNAs) constitute an important class of post-transcriptional regulators that control critical cellular processes in bacteria. Recent research using high-throughput transcriptomic approaches has led to a dramatic increase in th...
Machine Learning Computational Biology Bacterial Proteins Base Sequence RNA, Bacterial Vibrio cholerae
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Prognostication of zooplankton-driven cholera pathoepidemiological Dynamics: Novel Bayesian-regularized deep NARX neuroarchitecture.

Computers in biology and medicine Jun 1, 2025
BACKGROUND: Cholera outbreaks pose significant health concerns, particularly through freshwater contamination through zooplankton serving as reservoirs for Vibrio Cholerae. Understanding these complex interactions within the aquatic ecosystem through...
Humans Neural Networks, Computer Animals Bayes Theorem Models, Biological Zooplankton Vibrio cholerae Cholera
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CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction.

Bioinformatics (Oxford, England) Aug 1, 2018
MOTIVATION: Coenzyme A (CoA)-protein binding plays an important role in various cellular functions and metabolic pathways. However, no computational methods can be employed for CoA-binding residues prediction.
Software Protein Binding Computational Biology Support Vector Machine Proteins Models, Molecular Bacterial Proteins Protein Conformation Sequence Analysis, Protein Vibrio cholerae Acetyltransferases Coenzyme A
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