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Vibrio cholerae

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Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach.

BMC genomics
BACKGROUND: Small RNAs (sRNAs) constitute an important class of post-transcriptional regulators that control critical cellular processes in bacteria. Recent research using high-throughput transcriptomic approaches has led to a dramatic increase in th...

CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction.

Bioinformatics (Oxford, England)
MOTIVATION: Coenzyme A (CoA)-protein binding plays an important role in various cellular functions and metabolic pathways. However, no computational methods can be employed for CoA-binding residues prediction.

Unsupervised Learning Approach for Comparing Multiple Transposon Insertion Sequencing Studies.

mSphere
Transposon insertion sequencing (TIS) is a widely used technique for conducting genome-scale forward genetic screens in bacteria. However, few methods enable comparison of TIS data across multiple replicates of a screen or across independent screens,...