AIMC Topic: Benchmarking

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Data-centric challenges with the application and adoption of artificial intelligence for drug discovery.

Expert opinion on drug discovery
INTRODUCTION: Artificial intelligence (AI) is exhibiting tremendous potential to reduce the massive costs and long timescales of drug discovery. There are however important challenges currently limiting the impact and scope of AI models.

Benchmarking deep learning-based low-dose CT image denoising algorithms.

Medical physics
BACKGROUND: Long-lasting efforts have been made to reduce radiation dose and thus the potential radiation risk to the patient for computed tomography (CT) acquisitions without severe deterioration of image quality. To this end, various techniques hav...

Longitudinal deep neural networks for assessing metastatic brain cancer on a large open benchmark.

Nature communications
The detection and tracking of metastatic cancer over the lifetime of a patient remains a major challenge in clinical trials and real-world care. Advances in deep learning combined with massive datasets may enable the development of tools that can add...

Benchmarking Human-AI collaboration for common evidence appraisal tools.

Journal of clinical epidemiology
BACKGROUND AND OBJECTIVE: It is unknown whether large language models (LLMs) may facilitate time- and resource-intensive text-related processes in evidence appraisal. The objective was to quantify the agreement of LLMs with human consensus in apprais...

radMLBench: A dataset collection for benchmarking in radiomics.

Computers in biology and medicine
BACKGROUND: New machine learning methods and techniques are frequently introduced in radiomics, but they are often tested on a single dataset, which makes it challenging to assess their true benefit. Currently, there is a lack of a larger, publicly a...

Comparison and benchmark of deep learning methods for non-coding RNA classification.

PLoS computational biology
The involvement of non-coding RNAs in biological processes and diseases has made the exploration of their functions crucial. Most non-coding RNAs have yet to be studied, creating the need for methods that can rapidly classify large sets of non-coding...

SpeechBrain-MOABB: An open-source Python library for benchmarking deep neural networks applied to EEG signals.

Computers in biology and medicine
Deep learning has revolutionized EEG decoding, showcasing its ability to outperform traditional machine learning models. However, unlike other fields, EEG decoding lacks comprehensive open-source libraries dedicated to neural networks. Existing tools...

Benchmarking the negatives: Effect of negative data generation on the classification of miRNA-mRNA interactions.

PLoS computational biology
MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression post-transcriptionally. In animals, this regulation is achieved via base-pairing with partially complementary sequences on mainly 3' UTR region of messenger RNAs (mRNAs). Comp...

Benchmarking brain-computer interface algorithms: Riemannian approaches vs convolutional neural networks.

Journal of neural engineering
To date, a comprehensive comparison of Riemannian decoding methods with deep convolutional neural networks for EEG-based brain-computer interfaces remains absent from published work. We address this research gap by using MOABB, The Mother Of All BCI ...

Benchmarking robustness of deep neural networks in semantic segmentation of fluorescence microscopy images.

BMC bioinformatics
BACKGROUND: Fluorescence microscopy (FM) is an important and widely adopted biological imaging technique. Segmentation is often the first step in quantitative analysis of FM images. Deep neural networks (DNNs) have become the state-of-the-art tools f...