AIMC Topic: Database Management Systems

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A concept ideation framework for medical device design.

Journal of biomedical informatics May 6, 2015
Medical device design is a challenging process, often requiring collaboration between medical and engineering domain experts. This collaboration can be best institutionalized through systematic knowledge transfer between the two domains coupled with ...
Knowledge Bases Equipment and Supplies Database Management Systems Vocabulary, Controlled User-Computer Interface Equipment Design Databases, Factual Computer-Aided Design
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Toward a complete dataset of drug-drug interaction information from publicly available sources.

Journal of biomedical informatics Apr 24, 2015
Although potential drug-drug interactions (PDDIs) are a significant source of preventable drug-related harm, there is currently no single complete source of PDDI information. In the current study, all publically available sources of PDDI information ...
Pharmacovigilance Medical Record Linkage Database Management Systems Adverse Drug Reaction Reporting Systems Drug Interactions Natural Language Processing Machine Learning Data Mining Internet Databases, Factual
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DyKOSMap: A framework for mapping adaptation between biomedical knowledge organization systems.

Journal of biomedical informatics Apr 15, 2015
BACKGROUND: Knowledge Organization Systems (KOS) and their associated mappings play a central role in several decision support systems. However, by virtue of knowledge evolution, KOS entities are modified over time, impacting mappings and potentially...
Software Data Mining Data Accuracy Medical Record Linkage Database Management Systems Natural Language Processing Semantics Knowledge Bases Databases, Factual Decision Support Systems, Clinical
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A priori data-driven multi-clustered reservoir generation algorithm for echo state network.

PloS one Apr 13, 2015
Echo state networks (ESNs) with multi-clustered reservoir topology perform better in reservoir computing and robustness than those with random reservoir topology. However, these ESNs have a complex reservoir topology, which leads to difficulties in r...
Cluster Analysis Databases, Factual Database Management Systems Neural Networks, Computer Models, Neurological Computer Simulation Algorithms
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MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies.

Journal of biomedical informatics Mar 25, 2015
BACKGROUND: One of the major concerns of the biomedical community is the increasing prevalence of antimicrobial resistant microorganisms. Recent findings show that the diversification of colony morphology may be indicative of the expression of virule...
Natural Language Processing Internet User-Computer Interface Bacteria Database Management Systems Software Knowledge Bases Databases, Factual Biological Ontologies
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Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.

Journal of the American Medical Informatics Association : JAMIA Mar 1, 2021
BACKGROUND: The increasing complexity of data streams and computational processes in modern clinical health information systems makes reproducibility challenging. Clinical natural language processing (NLP) pipelines are routinely leveraged for the se...
Natural Language Processing Medical Informatics Database Management Systems Reproducibility of Results Computational Biology
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Evaluation of ontology structural metrics based on public repository data.

Briefings in bioinformatics Mar 23, 2020
The development and application of biological ontologies have increased significantly in recent years. These ontologies can be retrieved from different repositories, which do not provide much information about quality aspects of the ontologies. In th...
Biological Ontologies Database Management Systems Public Sector
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Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.

Briefings in bioinformatics Sep 27, 2019
The identification of interactions between drugs/compounds and their targets is crucial for the development of new drugs. In vitro screening experiments (i.e. bioassays) are frequently used for this purpose; however, experimental approaches are insuf...
Deep Learning Database Management Systems Computer Simulation Drug Discovery
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LNTP-MDBN: Big Data Integrated Learning Framework for Heterogeneous Image Set Classification.

Current medical imaging reviews Jan 1, 2019
BACKGROUND: With the explosive growth of global data, the term Big Data describes the enormous size of dataset through the detailed analysis. The big data analytics revealed the hidden patterns and secret correlations among the values. The major chal...
Algorithms Brain Deep Learning Humans Pattern Recognition, Automated Breast Database Management Systems Big Data Bone and Bones Data Mining Diagnostic Imaging
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KBase: The United States Department of Energy Systems Biology Knowledgebase.

Nature biotechnology Jul 6, 2018
United States Knowledge Bases Computational Biology Systems Biology Database Management Systems Humans
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