AIMC Topic: Drug Design

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Discovery and design of soft polymeric bio-inspired materials with multiscale simulations and artificial intelligence.

Journal of materials chemistry. B
Materials chemistry is at the forefront of the global "Fourth Industrial Revolution", in part by establishing a "Materials 4.0" paradigm. A key aspect of this paradigm is developing methods to effectively integrate hardware, software, and biological ...

VISAR: an interactive tool for dissecting chemical features learned by deep neural network QSAR models.

Bioinformatics (Oxford, England)
SUMMARY: Although many quantitative structure-activity relationship (QSAR) models are trained and evaluated for their predictive merits, understanding what models have been learning is of critical importance. However, the interpretation and visualiza...

Improvement in prediction of antigenic epitopes using stacked generalisation: an ensemble approach.

IET systems biology
The major intent of peptide vaccine designs, immunodiagnosis and antibody productions is to accurately identify linear B-cell epitopes. The determination of epitopes through experimental analysis is highly expensive. Therefore, it is desirable to dev...

PTML Modeling for Alzheimer's Disease: Design and Prediction of Virtual Multi-Target Inhibitors of GSK3B, HDAC1, and HDAC6.

Current topics in medicinal chemistry
BACKGROUND: Alzheimer's disease is characterized by a progressive pattern of cognitive and functional impairment, which ultimately leads to death. Computational approaches have played an important role in the context of drug discovery for anti-Alzhei...

Artificial Neural Networks in Computer-Aided Drug Design: An Overview of Recent Advances.

Advances in experimental medicine and biology
Computer-aided drug design (CADD) is the framework in which the huge amount of data accumulated by high-throughput experimental methods used in drug design is quantitatively studied. Its objectives include pattern recognition, biomarker identificatio...

Strategies for Design of Molecular Structures with a Desired Pharmacophore Using Deep Reinforcement Learning.

Chemical & pharmaceutical bulletin
The goal of drug design is to discover molecular structures that have suitable pharmacological properties in vast chemical space. In recent years, the use of deep generative models (DGMs) is getting a lot of attention as an effective method of genera...

Computational Models for Self-Interacting Proteins Prediction.

Protein and peptide letters
Self-Interacting Proteins (SIPs), whose two or more copies can interact with each other, have significant roles in cellular functions and evolution of Protein Interaction Networks (PINs). Knowing whether a protein can act on itself is important to un...