AIMC Topic: Knowledge Bases
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Automated extraction of genes associated with antibiotic resistance from the biomedical literature.
Database : the journal of biological databases and curation
Jan 29, 2022
The detection of bacterial antibiotic resistance phenotypes is important when carrying out clinical decisions for patient treatment. Conventional phenotypic testing involves culturing bacteria which requires a significant amount of time and work. Who...
lncRNAfunc: a knowledgebase of lncRNA function in human cancer.
Nucleic acids research
Jan 7, 2022
The long non-coding RNAs associating with other molecules can coordinate several physiological processes and their dysfunction can impact diverse human diseases. To date, systematic and intensive annotations on diverse interaction regulations of lncR...
The reactome pathway knowledgebase 2022.
Nucleic acids research
Jan 7, 2022
The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of physiological and pathological biological processes in humans, including both hereditary and acquired dise...
LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system.
Nucleic acids research
Jan 7, 2022
LncRNAWiki, a knowledgebase of human long non-coding RNAs (lncRNAs), has been rapidly expanded by incorporating more experimentally validated lncRNAs. Since it was built based on MediaWiki as its database system, it fails to manage data in a structur...
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases.
Methods in molecular biology (Clifton, N.J.)
Jan 1, 2022
Plant Reactome (https://plantreactome.gramene.org) and PubChem ( https://pubchem.ncbi.nlm.nih.gov ) are two reference data portals and resources for curated plant pathways, small molecules, metabolites, gene products, and macromolecular interactions....
Knowledge bases and software support for variant interpretation in precision oncology.
Briefings in bioinformatics
Nov 5, 2021
Precision oncology is a rapidly evolving interdisciplinary medical specialty. Comprehensive cancer panels are becoming increasingly available at pathology departments worldwide, creating the urgent need for scalable cancer variant annotation and mole...
PharmGKB, an Integrated Resource of Pharmacogenomic Knowledge.
Current protocols
Aug 1, 2021
The Pharmacogenomics Knowledgebase (PharmGKB) is an integrated online knowledge resource for the understanding of how genetic variation contributes to variation in drug response. Our focus includes not only pharmacogenomic information useful for clin...
CyanoPATH: a knowledgebase of genome-scale functional repertoire for toxic cyanobacterial blooms.
Briefings in bioinformatics
Jul 20, 2021
CyanoPATH is a database that curates and analyzes the common genomic functional repertoire for cyanobacteria harmful algal blooms (CyanoHABs) in eutrophic waters. Based on the literature of empirical studies and genome/protein databases, it summarize...
The International Alliance of Academies of Childhood Disability Knowledge Hub.
Developmental medicine and child neurology
Jul 1, 2021
Comparison of Knowledge Databases to Be Used in Automated Monitoring of Orthopedic Medical Devices.
Studies in health technology and informatics
May 27, 2021
Surveillance and traceability of medical devices (MD) is a challenge in health care systems. In the perspective of reusing EHR data to automate the monitoring of medical devices, we carried out a comparison of the main MD knowledge bases (MD-KDB) cur...
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