AIMC Topic: Likelihood Functions

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Accuracy of latent-variable estimation in Bayesian semi-supervised learning.

Neural networks : the official journal of the International Neural Network Society
Hierarchical probabilistic models, such as Gaussian mixture models, are widely used for unsupervised learning tasks. These models consist of observable and latent variables, which represent the observable data and the underlying data-generation proce...

Asymptotic accuracy of Bayesian estimation for a single latent variable.

Neural networks : the official journal of the International Neural Network Society
In data science and machine learning, hierarchical parametric models, such as mixture models, are often used. They contain two kinds of variables: observable variables, which represent the parts of the data that can be directly measured, and latent v...

A new modeling approach for quantifying expert opinion in the drug discovery process.

Statistics in medicine
Expert opinion plays an important role when choosing clusters of chemical compounds for further investigation. Often, the process by which the clusters are assigned to the experts for evaluation, the so-called selection process, and the qualitative r...

Prediction of hospitalization due to heart diseases by supervised learning methods.

International journal of medical informatics
BACKGROUND: In 2008, the United States spent $2.2 trillion for healthcare, which was 15.5% of its GDP. 31% of this expenditure is attributed to hospital care. Evidently, even modest reductions in hospital care costs matter. A 2009 study showed that n...

Innovations in clinical PET image reconstruction: advances in Bayesian penalized likelihood algorithm and deep learning.

Annals of nuclear medicine
Recent advances in PET image reconstruction have focused on achieving high image quality and quantitative accuracy. Bayesian penalized likelihood (BPL) algorithms, such as Q.Clear and HYPER Iterative that have been integrated into commercial PET syst...

How Effective Are Machine Learning and Doubly Robust Estimators in Incorporating High-Dimensional Proxies to Reduce Residual Confounding?

Pharmacoepidemiology and drug safety
BACKGROUND: Residual confounding presents a persistent challenge in observational studies, particularly in high-dimensional settings. High-dimensional proxy adjustment methods, such as the high-dimensional propensity score (hdPS), are widely used to ...

Phyloformer: Fast, Accurate, and Versatile Phylogenetic Reconstruction with Deep Neural Networks.

Molecular biology and evolution
Phylogenetic inference aims at reconstructing the tree describing the evolution of a set of sequences descending from a common ancestor. The high computational cost of state-of-the-art maximum likelihood and Bayesian inference methods limits their us...

Guidelines and Best Practices for the Use of Targeted Maximum Likelihood and Machine Learning When Estimating Causal Effects of Exposures on Time-To-Event Outcomes.

Statistics in medicine
Targeted maximum likelihood estimation (TMLE) is an increasingly popular framework for the estimation of causal effects. It requires modeling both the exposure and outcome but is doubly robust in the sense that it is valid if at least one of these mo...

An efficient deep learning method for amino acid substitution model selection.

Journal of evolutionary biology
Amino acid substitution models play an important role in studying the evolutionary relationships among species from protein sequences. The amino acid substitution model consists of a large number of parameters; therefore, it is estimated from hundred...

A machine-learning-based alternative to phylogenetic bootstrap.

Bioinformatics (Oxford, England)
MOTIVATION: Currently used methods for estimating branch support in phylogenetic analyses often rely on the classic Felsenstein's bootstrap, parametric tests, or their approximations. As these branch support scores are widely used in phylogenetic ana...