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Molecular Sequence Annotation

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How Does the Scientific Community Contribute to Gene Ontology?

Methods in molecular biology (Clifton, N.J.)
Collaborations between the scientific community and members of the Gene Ontology (GO) Consortium have led to an increase in the number and specificity of GO terms, as well as increasing the number of GO annotations. A variety of approaches have been ...

Computational Methods for Annotation Transfers from Sequence.

Methods in molecular biology (Clifton, N.J.)
Surveys of public sequence resources show that experimentally supported functional information is still completely missing for a considerable fraction of known proteins and is clearly incomplete for an even larger portion. Bioinformatics methods have...

Best Practices in Manual Annotation with the Gene Ontology.

Methods in molecular biology (Clifton, N.J.)
The Gene Ontology (GO) is a framework designed to represent biological knowledge about gene products' biological roles and the cellular location in which they act. Biocuration is a complex process: the body of scientific literature is large and selec...

Using the Gene Ontology to Annotate Key Players in Parkinson's Disease.

Neuroinformatics
The Gene Ontology (GO) is widely recognised as the gold standard bioinformatics resource for summarizing functional knowledge of gene products in a consistent and computable, information-rich language. GO describes cellular and organismal processes a...

Ontology-Based Prediction and Prioritization of Gene Functional Annotations.

IEEE/ACM transactions on computational biology and bioinformatics
Genes and their protein products are essential molecular units of a living organism. The knowledge of their functions is key for the understanding of physiological and pathological biological processes, as well as in the development of new drugs and ...

Extracting Cross-Ontology Weighted Association Rules from Gene Ontology Annotations.

IEEE/ACM transactions on computational biology and bioinformatics
Gene Ontology (GO) is a structured repository of concepts (GO Terms) that are associated to one or more gene products through a process referred to as annotation. The analysis of annotated data is an important opportunity for bioinformatics. There ar...

Using Semantic Similarities and csbl.go for Analyzing Microarray Data.

Methods in molecular biology (Clifton, N.J.)
Cellular phenotypes result from the combined effect of multiple genes, and high-throughput techniques such as DNA microarrays and deep sequencing allow monitoring this genomic complexity. The large scale of the resulting data, however, creates challe...

Exploiting ontology graph for predicting sparsely annotated gene function.

Bioinformatics (Oxford, England)
MOTIVATION: Systematically predicting gene (or protein) function based on molecular interaction networks has become an important tool in refining and enhancing the existing annotation catalogs, such as the Gene Ontology (GO) database. However, functi...