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National Library of Medicine (U.S.)

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Automatic Mapping of Terminology Items with Transformers.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Biomedical ontologies are a key component in many systems for the analysis of textual clinical data. They are employed to organize information about a certain domain relying on a hierarchy of different classes. Each class maps a concept to items in a...

Comparative study using inverse ontology cogency and alternatives for concept recognition in the annotated National Library of Medicine database.

Neural networks : the official journal of the International Neural Network Society
This paper introduces inverse ontology cogency, a concept recognition process and distance function that is biologically-inspired and competitive with alternative methods. The paper introduces inverse ontology cogency as a new alternative method. It ...

Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem.

AMIA ... Annual Symposium proceedings. AMIA Symposium
This year less than 200 National Library of Medicine indexers expect to index 1 million articles, and this would not be possible without the assistance of the Medical Text Indexer (MTI) system. MTI is an automated indexing system that provides MeSH m...

A High Recall Classifier for Selecting Articles for MEDLINE Indexing.

AMIA ... Annual Symposium proceedings. AMIA Symposium
MEDLINE is the National Library of Medicine's premier bibliographic database for biomedical literature. A highly valuable feature of the database is that each record is manually indexed with a controlled vocabulary called MeSH. Most MEDLINE journals ...

An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.

BMC bioinformatics
BACKGROUND: This article provides an overview of the first BIOASQ challenge, a competition on large-scale biomedical semantic indexing and question answering (QA), which took place between March and September 2013. BIOASQ assesses the ability of syst...

How the National Library of Medicine should evolve in an era of artificial intelligence.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVES: This article describes the challenges faced by the National Library of Medicine with the rise of artificial intelligence (AI) and access to human knowledge through large language models (LLMs).

Something New and Different: The Unified Medical Language System.

Studies in health technology and informatics
Donald A.B. Lindberg M.D. arrived at the U.S. National Library of Medicine in 1984 and quickly launched the Unified Medical Language System (UMLS) research and development project to help computer understand biomedical meaning and to enable retrieval...

GrantExtractor: Accurate Grant Support Information Extraction from Biomedical Fulltext Based on Bi-LSTM-CRF.

IEEE/ACM transactions on computational biology and bioinformatics
Grant support (GS) in the MEDLINE database refers to funding agencies and contract numbers. It is important for funding organizations to track their funding outcomes from the GS information. As such, how to accurately and automatically extract fundin...

Linguistic summarization of in-home sensor data.

Journal of biomedical informatics
INTRODUCTION: With the increase in the population of older adults around the world, a significant amount of work has been done on in-home sensor technology to aid the elderly age independently. However, due to the large amounts of data generated by t...