AIMC Topic: Natural Language Processing

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Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort Identification.

Studies in health technology and informatics
Electronic healthcare records data promises to improve the efficiency of patient eligibility screening, which is an important factor in the success of clinical trials and observational studies. To bridge the sociotechnical gap in cohort identificatio...

Using Deep Learning to Improve Phenotyping from Clinical Reports.

Studies in health technology and informatics
With the development of clinical databases and the ubiquity of EHRs, physicians and researchers alike have access to an unprecedented amount of data. Complexity of the available data has also increased since clinical reports are also included and req...

The Classification of Scientific Abstracts Using Text Statistical Features.

Studies in health technology and informatics
Automated abstracts classification could significantly facilitate scientific literature screening. The classification of short texts could be based on their statistical properties. This research aimed to evaluate the quality of short medical abstract...

Comparison of MetaMap, cTAKES, SIFR, and ECMT to Annotate Breast Cancer Patient Summaries.

Studies in health technology and informatics
Most clinical texts including breast cancer patient summaries (BCPSs) are elaborated as narrative documents difficult to process by decision support systems. Annotators have been developed to extract the relevant content of such documents, e.g., Meta...

Towards an Adaptive Clinical Transcription System for In-Situ Transcribing of Patient Encounter Information.

Studies in health technology and informatics
Electronic patient charts are essential for follow-up and multi-disciplinary care, but either take up an exorbitant amount of time during the patient encounter using a key-stroke entry system, or suffer from poor recall when made long after the encou...

AHD2FHIR: A Tool for Mapping of Natural Language Annotations to Fast Healthcare Interoperability Resources - A Technical Case Report.

Studies in health technology and informatics
A significant portion of data in Electronic Health Records is only available as unstructured text, such as surgical or finding reports, clinical notes and discharge summaries. To use this data for secondary purposes, natural language processing (NLP)...

Deep Learning Methods for Detecting Side Effects of Cancer Chemotherapies Reported in a Remote Monitoring Web Application.

Studies in health technology and informatics
The objective of our work was to develop deep learning methods for extracting and normalizing patient-reported free-text side effects in a cancer chemotherapy side effect remote monitoring web application. The F-measure was 0.79 for the medical conce...

Named Entity Recognition in Pubmed Abstracts for Pharmacovigilance Using Deep Learning.

Studies in health technology and informatics
Methods of natural language processing associated with machine learning or deep learning can support detection of adverse drug reactions in abstracts of case reports available on Pubmed. In 2012, Gurulingappa et al. proposed a training set for the re...