Studies in health technology and informatics
Jun 6, 2022
CONTEXT: Arden Syntax encodes knowledge as Medical Logic Modules (MLMs). Current work involves improvement of its representation of business processes.
We present an open-source eigenmode expansion (EME) software package entirely implemented in the Python programming language. Eigenmode expansion Python (EMEPy) utilizes artificial neural networks to reproduce electromagnetic eigenmode field profiles...
MOTIVATION: Tumor tile selection is a necessary prerequisite in patch-based cancer whole slide image analysis, which is labor-intensive and requires expertise. Whole slides are annotated as tumor or tumor free, but tiles within a tumor slide are not....
The identification of hidden responders is often an essential challenge in precision oncology. A recent attempt based on machine learning has been proposed for classifying aberrant pathway activity from multiomic cancer data. However, we note several...
Methods in molecular biology (Clifton, N.J.)
Jan 1, 2021
Single-cell RNAseq is an emerging technology that allows the quantification of gene expression in individual cells. In plants, single-cell sequencing technology has been applied to generate root cell expression maps under many experimental conditions...
Recently, different authors have reported Perturbation Theory (PT) methods combined with machine learning (ML) to obtain PTML (PT + ML) models. They have applied PTML models to the study of different biological systems. Here we present one state-of-a...
Journal of the American Medical Informatics Association : JAMIA
Mar 1, 2020
OBJECTIVE: We developed medExtractR, a natural language processing system to extract medication information from clinical notes. Using a targeted approach, medExtractR focuses on individual drugs to facilitate creation of medication-specific research...