AIMC Topic: PubMed

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EnzChemRED, a rich enzyme chemistry relation extraction dataset.

Scientific data
Expert curation is essential to capture knowledge of enzyme functions from the scientific literature in FAIR open knowledgebases but cannot keep pace with the rate of new discoveries and new publications. In this work we present EnzChemRED, for Enzym...

VAIV bio-discovery service using transformer model and retrieval augmented generation.

BMC bioinformatics
BACKGROUND: There has been a considerable advancement in AI technologies like LLM and machine learning to support biomedical knowledge discovery.

Artificial INtelligence to Support Informed DEcision-making (INSIDE) for Improved Literature Analysis in Oncology.

European urology focus
BACKGROUND: Defining optimal therapeutic sequencing strategies in prostate cancer (PC) is challenging and may be assisted by artificial intelligence (AI)-based tools for an analysis of the medical literature.

Improving biomedical Named Entity Recognition with additional external contexts.

Journal of biomedical informatics
OBJECTIVE: Biomedical Named Entity Recognition (bio NER) is the task of recognizing named entities in biomedical texts. This paper introduces a new model that addresses bio NER by considering additional external contexts. Different from prior methods...

Enhancing the coverage of SemRep using a relation classification approach.

Journal of biomedical informatics
OBJECTIVE: Relation extraction is an essential task in the field of biomedical literature mining and offers significant benefits for various downstream applications, including database curation, drug repurposing, and literature-based discovery. The b...

PubMed and beyond: biomedical literature search in the age of artificial intelligence.

EBioMedicine
Biomedical research yields vast information, much of which is only accessible through the literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent improvements in artificial intelligence (AI) have expanded functio...

Evidence of Age Estimation Procedures in Forensic Dentistry: Results from an Umbrella Review.

Medicina (Kaunas, Lithuania)
: Age estimation is an important tool when dealing with human remains or undocumented minors. Although the skull, the skeleton or the hand-wrist are used in age estimation as maturity indicators, they often present a lack of good conditions for a cor...

IDPpub: Illuminating the Dark Phosphoproteome Through PubMed Mining.

Molecular & cellular proteomics : MCP
Global phosphoproteomics experiments quantify tens of thousands of phosphorylation sites. However, data interpretation is hampered by our limited knowledge on functions, biological contexts, or precipitating enzymes of the phosphosites. This study es...

Natural language processing with machine learning methods to analyze unstructured patient-reported outcomes derived from electronic health records: A systematic review.

Artificial intelligence in medicine
OBJECTIVE: Natural language processing (NLP) combined with machine learning (ML) techniques are increasingly used to process unstructured/free-text patient-reported outcome (PRO) data available in electronic health records (EHRs). This systematic rev...