AIMC Topic: RNA, Plant

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Prediction of plant lncRNA by ensemble machine learning classifiers.

BMC genomics May 2, 2018
BACKGROUND: In plants, long non-protein coding RNAs are believed to have essential roles in development and stress responses. However, relative to advances on discerning biological roles for long non-protein coding RNAs in animal systems, this RNA cl...
Machine Learning Computational Biology RNA, Long Noncoding Stochastic Processes Open Reading Frames RNA, Plant
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PlantC2U: deep learning of cross-species sequence landscapes predicts plastid C-to-U RNA editing in plants.

Journal of experimental botany Apr 15, 2024
In plants, C-to-U RNA editing mainly occurs in plastid and mitochondrial transcripts, which contributes to a complex transcriptional regulatory network. More evidence reveals that RNA editing plays critical roles in plant growth and development. Howe...
Transcriptome Deep Learning Plants RNA Editing RNA, Plant Plastids
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microRPM: a microRNA prediction model based only on plant small RNA sequencing data.

Bioinformatics (Oxford, England) Apr 1, 2018
MOTIVATION: MicroRNAs (miRNAs) are endogenous non-coding small RNAs (of about 22 nucleotides), which play an important role in the post-transcriptional regulation of gene expression via either mRNA cleavage or translation inhibition. Several machine ...
Computational Biology Sequence Analysis, RNA Support Vector Machine MicroRNAs Plants High-Throughput Nucleotide Sequencing Genome, Plant RNA, Plant
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Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests.

Nucleic acids research Dec 1, 2017
The discovery of microRNAs (miRNAs) remains an important problem, particularly given the growth of high-throughput sequencing, cell sorting and single cell biology. While a large number of miRNAs have already been annotated, there may well be large n...
Humans Machine Learning Software Algorithms Animals Gene Expression Profiling Single-Cell Analysis Mice Genomics Sequence Analysis, RNA MicroRNAs High-Throughput Nucleotide Sequencing RNA, Small Untranslated Ribonuclease III RNA, Plant
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