PloS one
Jan 20, 2026
Semantic code clone detection plays an essential role in software maintenance and quality assurance, as it helps uncover fragments of code that express the same logic even when their syntax has been altered or deliberately obfuscated. In this study, ...
NAR genomics and bioinformatics
Jan 16, 2026
We have evaluated the prediction accuracy of three different tools, deep-learning-based AlphaFold2, AlphaFold3, and large language model-based ESMFold, utilizing the experimentally derived structures deposited in the Protein Data Bank between 2022 an...
NAR genomics and bioinformatics
Jan 15, 2026
Noncoding RNAs have increasingly recognized roles in critical molecular mechanisms of disease. However, the noncoding genome of Drosophila melanogaster, one of the most powerful disease model organisms, has been understudied. Here, we present FLYNC-F...
NAR genomics and bioinformatics
Jan 15, 2026
Synonymous single nucleotide variants (sSNVs), traditionally seen as neutral, are now recognized for their biological impact. To assess their relevance, we developed SyMetrics, a framework that integrates predictors of splicing, RNA stability, evolut...
Physics in medicine and biology
Jan 14, 2026
Over the past years, we have developed GATE version 10, a major re-implementation of the long-standing Geant4-based Monte Carlo application for particle and radiation transport simulation in medical physics. This release introduces many new features ...
Journal of the American Mosquito Control Association
Jan 8, 2026
Assessing and advancing cutting-edge technologies that are designed to optimize mosquito surveillance strategies is crucial given the complex challenges presented by our rapidly changing environments. Vectech's Identification-X (IDX) machine offers a...
ACS synthetic biology
Jan 7, 2026
Synthetic biology laboratories generate diverse forms of data and metadata throughout a project's life cycle, such as sequences, models, protocols, images, and time-series measurements. Unfortunately, these assets are scattered across spreadsheets, p...
The Journal of neuroscience : the official journal of the Society for Neuroscience
Jan 7, 2026
Systems neuroscience has experienced an explosion of new tools for reading and writing neural activity, enabling exciting new experiments (e.g., all-optical interrogation, closed-loop control) for interrogating neural circuits. Unfortunately, these a...
Scientific reports
Jan 6, 2026
To investigate the potential application of existing artificial intelligence (AI) software in diagnosing COVID-19 (coronavirus disease 2019) and other pneumonia-related radiographic findings with the unprecedented challenge by COVID-19 pandemic, leve...
Journal of chemical information and modeling
Dec 26, 2025
Accurate prediction of molecular properties is essential for computational design in many areas of chemistry. Deep learning has been used in these prediction tasks for a wide variety of molecular properties, and the availability of user-friendly open...