AIMC Topic: Software

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Top-down machine learning approach for high-throughput single-molecule analysis.

eLife
Single-molecule approaches provide enormous insight into the dynamics of biomolecules, but adequately sampling distributions of states and events often requires extensive sampling. Although emerging experimental techniques can generate such large dat...

MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning.

Journal of structural biology
Cryo-EM Single Particle Analysis workflows require tens of thousands of high-quality particle projections to unveil the three-dimensional structure of macromolecules. Conventional methods for automatic particle picking tend to suffer from high false-...

Multiview learning for understanding functional multiomics.

PLoS computational biology
The molecular mechanisms and functions in complex biological systems currently remain elusive. Recent high-throughput techniques, such as next-generation sequencing, have generated a wide variety of multiomics datasets that enable the identification ...

Artificial intelligence and machine learning in nephropathology.

Kidney international
Artificial intelligence (AI) for the purpose of this review is an umbrella term for technologies emulating a nephropathologist's ability to extract information on diagnosis, prognosis, and therapy responsiveness from native or transplant kidney biops...

Molib: A machine learning based classification tool for the prediction of biofilm inhibitory molecules.

Genomics
Identification of biofilm inhibitory small molecules appears promising for therapeutic intervention against biofilm-forming bacteria. However, the experimental identification of such molecules is a time-consuming task, and thus, the computational app...

Surgeon-robot interface development framework.

Computers in biology and medicine
The progress of robotic medicine leads to the emergence of an increasing number of highly specialized automated systems based on specialized software. In any such system, there is the task of translating the surgeon's requests into the process of aut...

Deep learning based searching approach for RDF graphs.

PloS one
The Internet is a remarkably complex technical system. Its rapid growth has also brought technical issues such as problems to information retrieval. Search engines retrieve requested information based on the provided keywords. Consequently, it is dif...

SWIFT-Active Screener: Accelerated document screening through active learning and integrated recall estimation.

Environment international
BACKGROUND: In the screening phase of systematic review, researchers use detailed inclusion/exclusion criteria to decide whether each article in a set of candidate articles is relevant to the research question under consideration. A typical review ma...

Machine learning for cluster analysis of localization microscopy data.

Nature communications
Quantifying the extent to which points are clustered in single-molecule localization microscopy data is vital to understanding the spatial relationships between molecules in the underlying sample. Many existing computational approaches are limited in...