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Genetic Predisposition to Disease

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AI-powered precision medicine: utilizing genetic risk factor optimization to revolutionize healthcare.

NAR genomics and bioinformatics
The convergence of artificial intelligence (AI) and biomedical data is transforming precision medicine by enabling the use of genetic risk factors (GRFs) for customized healthcare services based on individual needs. Although GRFs play an essential ro...

Exploring new drug treatment targets for immune related bone diseases using a multi omics joint analysis strategy.

Scientific reports
In the field of treatment and prevention of immune-related bone diseases, significant challenges persist, necessitating the urgent exploration of new and effective treatment methods. However, most existing Mendelian randomization (MR) studies are con...

Analysis of shared pathogenic mechanisms and drug targets in myocardial infarction and gastric cancer based on transcriptomics and machine learning.

Frontiers in immunology
BACKGROUND: Recent studies have suggested a potential association between gastric cancer (GC) and myocardial infarction (MI), with shared pathogenic factors. This study aimed to identify these common factors and potential pharmacologic targets.

From classical approaches to artificial intelligence, old and new tools for PDAC risk stratification and prediction.

Seminars in cancer biology
Pancreatic ductal adenocarcinoma (PDAC) is recognized as one of the most lethal malignancies, characterized by late-stage diagnosis and limited therapeutic options. Risk stratification has traditionally been performed using epidemiological studies an...

GONNMDA: A Ordered Message Passing GNN Approach for miRNA-Disease Association Prediction.

Genes
Small non-coding molecules known as microRNAs (miRNAs) play a critical role in disease diagnosis, treatment, and prognosis evaluation. Traditional wet-lab methods for validating miRNA-disease associations are often time-consuming and inefficient. Wit...

GDReCo: Fine-grained gene-disease relationship extraction corpus.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Understanding gene-disease relationships is crucial for medical research, drug discovery, clinical diagnosis, and other fields. However, there is currently no high-quality, fine-grained corpus available for training Natural ...

Identifying potential risk genes for clear cell renal cell carcinoma with deep reinforcement learning.

Nature communications
Clear cell renal cell carcinoma (ccRCC) is the most prevalent type of renal cell carcinoma. However, our understanding of ccRCC risk genes remains limited. This gap in knowledge poses challenges to the effective diagnosis and treatment of ccRCC. To a...

Prediction of new-onset migraine using clinical-genotypic data from the HUNT Study: a machine learning analysis.

The journal of headache and pain
BACKGROUND: Migraine is associated with a range of symptoms and comorbid disorders and has a strong genetic basis, but the currently identified risk loci only explain a small portion of the heritability, often termed the "missing heritability". We ai...

iPiDA-LGE: a local and global graph ensemble learning framework for identifying piRNA-disease associations.

BMC biology
BACKGROUND: Exploring piRNA-disease associations can help discover candidate diagnostic or prognostic biomarkers and therapeutic targets. Several computational methods have been presented for identifying associations between piRNAs and diseases. Howe...

Ge-SAND: an explainable deep learning-driven framework for disease risk prediction by uncovering complex genetic interactions in parallel.

BMC genomics
BACKGROUND: Accurate genetic risk prediction and understanding the mechanisms underlying complex diseases are essential for effective intervention and precision medicine. However, current methods often struggle to capture the intricate and subtle gen...