AIMC Topic: Software

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A malware classification method based on directed API call relationships.

PloS one
In response to the growing complexity of network threats, researchers are increasingly turning to machine learning and deep learning techniques to develop advanced models for malware detection. Many existing methods that utilize Application Programmi...

AmIActive (AIA): A Large-scale QSAR Based Target Fishing and Polypharmacology Predictive Web Tool.

Journal of molecular biology
Here, we introduce AmIActive (AIA), a QSAR-based web tool for biological activity prediction and target fishing. The AIA system uses QSAR models trained with biological activity data from the ChEMBL database and currently covers single proteins, prot...

Comparison of ChatGPT-4o, Google Gemini 1.5 Pro, Microsoft Copilot Pro, and Ophthalmologists in the management of uveitis and ocular inflammation: A comparative study of large language models.

Journal francais d'ophtalmologie
PURPOSE: The aim of this study was to compare the latest large language models (LLMs) ChatGPT-4o, Google Gemini 1.5 Pro and Microsoft Copilot Pro developed by three different companies, with each other and with a group of ophthalmologists, to reveal ...

Validation of OncoOrigin: An Integrative AI Tool for Primary Cancer Site Prediction with Graphical User Interface to Facilitate Clinical Application.

International journal of molecular sciences
Cancers of unknown primary (CUPs) represent a significant diagnostic and therapeutic challenge in the field of oncology. Due to the limitations of current diagnostic tools in these cases, novel approaches must be brought forward to improve treatment ...

MuCST: restoring and integrating heterogeneous morphology images and spatial transcriptomics data with contrastive learning.

Genome medicine
Spatially resolved transcriptomics (SRT) simultaneously measure spatial location, histology images, and transcriptional profiles of cells or regions in undissociated tissues. Integrative analysis of multi-modal SRT data holds immense potential for un...

Unveiling the power of R: a comprehensive perspective for laboratory medicine data analysis.

Clinical chemistry and laboratory medicine
R language has gained traction in laboratory medicine for its statistical power and dynamic tools like RMarkdown and RShiny. However, there is limited literature summarizing R packages and functions tailored for laboratory medicine, making it difficu...

RBPsuite 2.0: an updated RNA-protein binding site prediction suite with high coverage on species and proteins based on deep learning.

BMC biology
BACKGROUND: RNA-binding proteins (RBPs) play crucial roles in many biological processes, and computationally identifying RNA-RBP interactions provides insights into the biological mechanism of diseases associated with RBPs.

BacTermFinder: a comprehensive and general bacterial terminator finder using a CNN ensemble.

NAR genomics and bioinformatics
A terminator is a DNA region that ends the transcription process. Currently, multiple computational tools are available for predicting bacterial terminators. However, these methods are specialized for certain bacteria or terminator type (i.e. intrins...

Popfinder: A Highly Effective Artificial Neural Network Package for Genetic Population Assignment.

Molecular ecology resources
The ability to assign biological samples to source populations with high accuracy and precision based on genetic variation is important for numerous applications from ecological studies through wildlife conservation to epidemiology. However, populati...

FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events.

Nature communications
Non-targeted metabolomics holds great promise for advancing precision medicine and biomarker discovery. However, identifying compounds from tandem mass spectra remains a challenging task due to the incomplete nature of spectral reference libraries. A...