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Systematized Nomenclature of Medicine

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Extracting Housing and Food Insecurity Information From Clinical Notes Using cTAKES.

Health services research
OBJECTIVE: To assess the utility and challenges of using natural language processing (NLP) in electronic health records (EHRs) to ascertain health-related social needs (HRSNs) among older adults.

Large language models vs human for classifying clinical documents.

International journal of medical informatics
BACKGROUND: Accurate classification of medical records is crucial for clinical documentation, particularly when using the 10th revision of the International Classification of Diseases (ICD-10) coding system. The use of machine learning algorithms and...

Automated derivation of diagnostic criteria for lung cancer using natural language processing on electronic health records: a pilot study.

BMC medical informatics and decision making
BACKGROUND: The digitisation of healthcare records has generated vast amounts of unstructured data, presenting opportunities for improvements in disease diagnosis when clinical coding falls short, such as in the recording of patient symptoms. This st...

Report of theĀ HIMSS-SIIM Enterprise Imaging Community Data Standards Evaluation Workgroup: Anatomic Ontology Assessment.

Journal of imaging informatics in medicine
Previously, the lack of a standard body part ontology has been identified as a critical deficiency needed to enable enterprise imaging. This whitepaper aims to provide a comprehensive assessment of anatomical ontologies with the aim of facilitating e...

Early evaluation of a natural language processing tool to improve access to educational resources for surgical patients.

European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society
PURPOSE: Accessible patient information sources are vital in educating patients about the benefits and risks of spinal surgery, which is crucial for obtaining informed consent. We aim to assess the effectiveness of a natural language processing (NLP)...

Machine translation of standardised medical terminology using natural language processing: A scoping review.

New biotechnology
Standardised medical terminologies are used to ensure accurate and consistent communication of information and to facilitate data exchange. Currently, many terminologies are only available in English, which hinders international research and automate...

Logical definition-based identification of potential missing concepts in SNOMED CT.

BMC medical informatics and decision making
BACKGROUND: Biomedical ontologies are representations of biomedical knowledge that provide terms with precisely defined meanings. They play a vital role in facilitating biomedical research in a cross-disciplinary manner. Quality issues of biomedical ...

Defining the distance between diseases using SNOMED CT embeddings.

Journal of biomedical informatics
Characterizing disease relationships is essential to biomedical research to understand disease etiology and improve clinical decision-making. Measurements of distance between disease pairs enable valuable research tasks, such as subgrouping patients ...

Performance assessment of ontology matching systems for FAIR data.

Journal of biomedical semantics
BACKGROUND: Ontology matching should contribute to the interoperability aspect of FAIR data (Findable, Accessible, Interoperable, and Reusable). Multiple data sources can use different ontologies for annotating their data and, thus, creating the need...

A vector-based semantic relatedness measure using multiple relations within SNOMED CT and UMLS.

Journal of biomedical informatics
OBJECTIVE: To propose a new vector-based relatedness metric that derives word vectors from the intrinsic structure of biomedical ontologies, without consulting external resources such as large-scale biomedical corpora.