Database : the journal of biological databases and curation
Jan 1, 2019
The existence of annotated text corpora is essential for the development of public health services and tools based on natural language processing (NLP) and text mining. Recently organized biomedical NLP shared tasks have provided annotated corpora re...
Database : the journal of biological databases and curation
Jan 1, 2019
The scientific literature contains large amounts of information on genes, proteins, chemicals and their interactions. Extraction and integration of this information in curated knowledge bases help researchers support their experimental results, leadi...
Database : the journal of biological databases and curation
Jan 1, 2019
Deep learning contributes significantly to researches in biological sciences and drug discovery. Previous studies suggested that deep learning techniques have shown superior performance to other machine learning algorithms in virtual screening, which...
Database : the journal of biological databases and curation
Jan 1, 2019
Knowledge of the molecular interactions of biological and chemical entities and their involvement in biological processes or clinical phenotypes is important for data interpretation. Unfortunately, this knowledge is mostly embedded in the literature ...
Database : the journal of biological databases and curation
Jan 1, 2019
The Clinical Drug Experience Knowledgebase (CDEK) is a database and web platform of active pharmaceutical ingredients with evidence of clinical testing as well as the organizations involved in their research and development. CDEK was curated by disam...
Database : the journal of biological databases and curation
Jan 1, 2019
Next-generation sequencing technologies and the availability of an increasing number of mammalian and other genomes allow gene expression studies, particularly RNA sequencing, in many non-model organisms. However, incomplete genome annotation and ass...
Database : the journal of biological databases and curation
Jan 1, 2019
Endometriosis is a complex, benign, estrogen-dependent gynecological disorder with an incidence of ~10% women in reproductive age. The implantation and growth of endometrial cells outside the uterus leads to the development of endometriosis. Endometr...
Database : the journal of biological databases and curation
Jan 1, 2019
A rich source of chemical-protein interactions (CPIs) is locked in the exponentially growing biomedical literature. Automatic extraction of CPIs is a crucial task in biomedical natural language processing (NLP), which has great benefits for pharmacol...
Database : the journal of biological databases and curation
Jan 1, 2019
Gastrointestinal (GI) cancer is common, characterized by high mortality, and includes oesophagus, gastric, liver, bile duct, pancreas, rectal and colon cancers. The insufficient specificity and sensitivity of biomarkers is still a key clinical hindra...
Database : the journal of biological databases and curation
Jan 1, 2019
We investigate the application of deep learning to biocuration tasks that involve classification of text associated with biomedical evidence in primary research articles. We developed a large-scale corpus of molecular papers derived from PubMed and P...