Modeling factors influencing disease phenotypes, from biomarker profiling study datasets, is a critical task in biomedicine. Such datasets are typically generated from high-throughput 'omic' technologies, which help examine disease mechanisms at an u...
CONTEXT: The critical nature of patients in Intensive Care Units (ICUs) demands intensive monitoring of their vital signs as well as highly qualified professional assistance. The combination of these needs makes ICUs very expensive, which requires in...
Drug-drug interactions (DDIs) extraction is one of the important tasks in the field of biomedical relation extraction, which plays an important role in the field of pharmacovigilance. Previous neural network based models have achieved good performanc...
Deep learning Convolutional Neural Networks have achieved remarkable performance in a variety of classification tasks. The data-driven nature of deep learning indicates that a model behaves in response to the data used to train the model, and the qua...
Text summarization tools can help biomedical researchers and clinicians reduce the time and effort needed for acquiring important information from numerous documents. It has been shown that the input text can be modeled as a graph, and important sent...
The free-form portions of clinical notes are a significant source of information for research, but before they can be used, they must be de-identified to protect patients' privacy. De-identification efforts have focused on known identifier types (nam...
Identifying patients eligible for clinical trials using electronic health records (EHRs) is a challenging task usually requiring a comprehensive analysis of information stored in multiple EHRs of a patient. The goal of this study is to investigate di...
Laparoscopic liver surgery is challenging to perform because of compromised ability of the surgeon to localize subsurface anatomy due to minimal invasive visibility. While image guidance has the potential to address this barrier, intraoperative facto...
Clinical Named Entity Recognition (CNER) is a critical task which aims to identify and classify clinical terms in electronic medical records. In recent years, deep neural networks have achieved significant success in CNER. However, these methods requ...
Medical error is a leading cause of patient death in the United States. Among the different types of medical errors, harm to patients caused by doctors missing early signs of deterioration is especially challenging to address due to the heterogeneity...
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