AI Medical Compendium Journal:
Journal of biomedical semantics

Showing 31 to 40 of 193 articles

SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks.

Journal of biomedical semantics
BACKGROUND: The high volume of research focusing on extracting patient information from electronic health records (EHRs) has led to an increase in the demand for annotated corpora, which are a precious resource for both the development and evaluation...

A multipurpose TNM stage ontology for cancer registries.

Journal of biomedical semantics
BACKGROUND: Population-based cancer registries are a critical reference source for the surveillance and control of cancer. Cancer registries work extensively with the internationally recognised TNM classification system used to stage solid tumours, b...

Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation.

Journal of biomedical semantics
BACKGROUND: Electronic Laboratory Notebooks (ELNs) are used to document experiments and investigations in the wet-lab. Protocols in ELNs contain a detailed description of the conducted steps including the necessary information to understand the proce...

Ontology-based identification and prioritization of candidate drugs for epilepsy from literature.

Journal of biomedical semantics
BACKGROUND: Drug repurposing can improve the return of investment as it finds new uses for existing drugs. Literature-based analyses exploit factual knowledge on drugs and diseases, e.g. from databases, and combine it with information from scholarly ...

End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach.

Journal of biomedical semantics
BACKGROUND: The advancement of science and technologies play an immense role in the way scientific experiments are being conducted. Understanding how experiments are performed and how results are derived has become significantly more complex with the...

Residual refinement for interactive skin lesion segmentation.

Journal of biomedical semantics
BACKGROUND: Image segmentation is a difficult and classic problem. It has a wide range of applications, one of which is skin lesion segmentation. Numerous researchers have made great efforts to tackle the problem, yet there is still no universal meth...

An ontology network for Diabetes Mellitus in Mexico.

Journal of biomedical semantics
BACKGROUND: Medical experts in the domain of Diabetes Mellitus (DM) acquire specific knowledge from diabetic patients through monitoring and interaction. This allows them to know the disease and information about other conditions or comorbidities, tr...

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature.

Journal of biomedical semantics
BACKGROUND: With COVID-19 still in its pandemic stage, extensive research has generated increasing amounts of data and knowledge. As many studies are published within a short span of time, we often lose an integrative and comprehensive picture of hos...

Syntax-based transfer learning for the task of biomedical relation extraction.

Journal of biomedical semantics
BACKGROUND: Transfer learning aims at enhancing machine learning performance on a problem by reusing labeled data originally designed for a related, but distinct problem. In particular, domain adaptation consists for a specific task, in reusing train...

Toward a systematic conflict resolution framework for ontologies.

Journal of biomedical semantics
BACKGROUND: The ontology authoring step in ontology development involves having to make choices about what subject domain knowledge to include. This may concern sorting out ontological differences and making choices between conflicting axioms due to ...