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Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2.

Journal of biomedical informatics
The second track of the 2014 i2b2/UTHealth natural language processing shared task focused on identifying medical risk factors related to Coronary Artery Disease (CAD) in the narratives of longitudinal medical records of diabetic patients. The risk f...

Combining knowledge- and data-driven methods for de-identification of clinical narratives.

Journal of biomedical informatics
A recent promise to access unstructured clinical data from electronic health records on large-scale has revitalized the interest in automated de-identification of clinical notes, which includes the identification of mentions of Protected Health Infor...

Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge.

Journal of biomedical informatics
This paper describes the use of an agile text mining platform (Linguamatics' Interactive Information Extraction Platform, I2E) to extract document-level cardiac risk factors in patient records as defined in the i2b2/UTHealth 2014 challenge. The appro...

Using local lexicalized rules to identify heart disease risk factors in clinical notes.

Journal of biomedical informatics
Heart disease is the leading cause of death globally and a significant part of the human population lives with it. A number of risk factors have been recognized as contributing to the disease, including obesity, coronary artery disease (CAD), hyperte...

The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.

Journal of biomedical informatics
This paper describes a supervised machine learning approach for identifying heart disease risk factors in clinical text, and assessing the impact of annotation granularity and quality on the system's ability to recognize these risk factors. We utiliz...

Automatic de-identification of electronic medical records using token-level and character-level conditional random fields.

Journal of biomedical informatics
De-identification, identifying and removing all protected health information (PHI) present in clinical data including electronic medical records (EMRs), is a critical step in making clinical data publicly available. The 2014 i2b2 (Center of Informati...

Annotating risk factors for heart disease in clinical narratives for diabetic patients.

Journal of biomedical informatics
The 2014 i2b2/UTHealth natural language processing shared task featured a track focused on identifying risk factors for heart disease (specifically, Cardiac Artery Disease) in clinical narratives. For this track, we used a "light" annotation paradigm...

Systematic Poisoning Attacks on and Defenses for Machine Learning in Healthcare.

IEEE journal of biomedical and health informatics
Machine learning is being used in a wide range of application domains to discover patterns in large datasets. Increasingly, the results of machine learning drive critical decisions in applications related to healthcare and biomedicine. Such health-re...

Building organisational cyber resilience: A strategic knowledge-based view of cyber security management.

Journal of business continuity & emergency planning
The concept of cyber resilience has emerged in recent years in response to the recognition that cyber security is more than just risk management. Cyber resilience is the goal of organisations, institutions and governments across the world and yet the...