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Histological Techniques

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Perception without preconception: comparison between the human and machine learner in recognition of tissues from histological sections.

Scientific reports
Deep neural networks (DNNs) have shown success in image classification, with high accuracy in recognition of everyday objects. Performance of DNNs has traditionally been measured assuming human accuracy is perfect. In specific problem domains, howeve...

Fast and scalable search of whole-slide images via self-supervised deep learning.

Nature biomedical engineering
The adoption of digital pathology has enabled the curation of large repositories of gigapixel whole-slide images (WSIs). Computationally identifying WSIs with similar morphologic features within large repositories without requiring supervised trainin...

[Development of the use of artificial intelligence in the management of chronic inflammatory bowel disease].

Annales de pathologie
Complexity of inflammatory bowel diseases (IBD) lies on their management and their biology. Clinics, blood and fecal samples tests, endoscopy and histology are the main tools guiding IBD treatment, but they generate a large amount of data, difficult ...

ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Histopathology is the gold standard for diagnosis of many cancers. Recent advances in computer vision, specifically deep learning, have facilitated the analysis of histopathology images for many tasks, including the detectio...

Cancer prediction from few amounts of histology samples through self-attention based multi-routines cross-domains network.

Physics in medicine and biology
OBJECTIVE: Rapid and efficient analysis of cancer has become a focus of research. Artificial intelligence can use histopathological data to quickly determine the cancer situation, but still faces challenges. For example, the convolutional network is ...

DEPAS: De-novo Pathology Semantic Masks using a Generative Model.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
The integration of artificial intelligence (AI) into digital pathology has the potential to automate and improve various tasks, such as image analysis and diagnostic decision-making. Yet, the inherent variability of tissues, together with the need fo...

Protocol for automated multivariate quantitative-image-based cytometry analysis by fluorescence microscopy of asynchronous adherent cells.

STAR protocols
Here, we present a protocol for multivariate quantitative-image-based cytometry (QIBC) analysis by fluorescence microscopy of asynchronous adherent cells. We describe steps for the preparation, treatment, and fixation of cells, sample staining, and i...

Registered multi-device/staining histology image dataset for domain-agnostic machine learning models.

Scientific data
Variations in color and texture of histopathology images are caused by differences in staining conditions and imaging devices between hospitals. These biases decrease the robustness of machine learning models exposed to out-of-domain data. To address...

Sliding Window Optimal Transport for Open World Artifact Detection in Histopathology.

IEEE journal of biomedical and health informatics
Histological images are frequently impaired by local artifacts from scanner malfunctions or iatrogenic processes - caused by preparation - impacting the performance of Deep Learning models. Models often struggle with the slightest out-of-distribution...

FedDBL: Communication and Data Efficient Federated Deep-Broad Learning for Histopathological Tissue Classification.

IEEE transactions on cybernetics
Histopathological tissue classification is a fundamental task in computational pathology. Deep learning (DL)-based models have achieved superior performance but centralized training suffers from the privacy leakage problem. Federated learning (FL) ca...