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Metabolic Engineering

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Design, Evaluation, and Implementation of Synthetic Isopentyldiol Pathways in .

ACS synthetic biology
Isopentyldiol (IPDO) is an important raw material in the cosmetic industry. So far, IPDO is exclusively produced through chemical synthesis. Growing interest in natural personal care products has inspired the quest to develop a biobased process. We p...

Enabling pathway design by multiplex experimentation and machine learning.

Metabolic engineering
The remarkable metabolic diversity observed in nature has provided a foundation for sustainable production of a wide array of valuable molecules. However, transferring the biosynthetic pathway to the desired host often runs into inherent failures tha...

Rational construction of synthetic consortia: Key considerations and model-based methods for guiding the development of a novel biosynthesis platform.

Biotechnology advances
The rapid development of synthetic biology has significantly improved the capabilities of mono-culture systems in converting different substrates into various value-added bio-chemicals through metabolic engineering. However, overexpression of biosynt...

Construction of an enzyme-constrained metabolic network model for Myceliophthora thermophila using machine learning-based k data.

Microbial cell factories
BACKGROUND: Genome-scale metabolic models (GEMs) serve as effective tools for understanding cellular phenotypes and predicting engineering targets in the development of industrial strain. Enzyme-constrained genome-scale metabolic models (ecGEMs) have...

Machine learning for the advancement of genome-scale metabolic modeling.

Biotechnology advances
Constraint-based modeling (CBM) has evolved as the core systems biology tool to map the interrelations between genotype, phenotype, and external environment. The recent advancement of high-throughput experimental approaches and multi-omics strategies...

Advancing microbial production through artificial intelligence-aided biology.

Biotechnology advances
Microbial cell factories (MCFs) have been leveraged to construct sustainable platforms for value-added compound production. To optimize metabolism and reach optimal productivity, synthetic biology has developed various genetic devices to engineer mic...

Cell factory design with advanced metabolic modelling empowered by artificial intelligence.

Metabolic engineering
Advances in synthetic biology and artificial intelligence (AI) have provided new opportunities for modern biotechnology. High-performance cell factories, the backbone of industrial biotechnology, are ultimately responsible for determining whether a b...

AI-based automated construction of high-precision Geobacillus thermoglucosidasius enzyme constraint model.

Metabolic engineering
Geobacillus thermoglucosidasius NCIMB 11955 possesses advantages, such as high-temperature tolerance, rapid growth rate, and low contamination risk. Additionally, it features efficient gene editing tools, making it one of the most promising next-gene...

Machine learning reveals novel compound for the improved production of chitooligosaccharides in Escherichia coli.

New biotechnology
In order to improve predictability of outcome and reduce costly rounds of trial-and-error, machine learning models have been of increasing importance in the field of synthetic biology. Besides applications in predicting genome annotation, process par...

Metabolic reprogramming and machine learning-guided cofactor engineering to boost nicotinamide mononucleotide production in Escherichia coli.

Bioresource technology
Nicotinamide mononucleotide (NMN) is a bioactive compound in NAD(P) metabolism, which exhibits diverse pharmaceutical interests. However, enhancing NMN biosynthesis faces the challange of competing with cell growth and disturbing intracellular redox ...