AIMC Topic: Multigene Family

Clear Filters Showing 1 to 10 of 40 articles

Whole-genome sequencing and comparative genomics reveal antimicrobial potential and adaptive traits of Bacillus velezensis AM12.

Functional & integrative genomics
The global rise of antimicrobial resistance has intensified the demand for novel antimicrobial agents with broad-spectrum efficacy and unique mechanisms of action. Herein, a marine-derived strain, Bacillus velezensis (B. velezensis) AM12, exhibiting ...

BGC-MAC and BGC-MAP: Attention-Based Models for Biosynthetic Gene Cluster Classification and Product Matching.

Journal of chemical information and modeling
Natural products, synthesized via enzymes encoded by biosynthetic gene clusters (BGCs), represent a major source of therapeutic agents. Accurate BGC annotation is essential to unlocking the vast potential of natural product diversity. However, BGC an...

Recent strategies and methodological advances for microbial natural product research in the post-genomics era.

Archives of microbiology
Microorganisms remain a prolific source of bioactive compounds, yet discovery efforts are often hindered by traditional methods and the repeated isolation of known molecules. In the post-genomics era, advances in genome mining and multi-omics technol...

Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH.

Nature communications
Plants release a substantial fraction of their photosynthesized carbon into the rhizosphere as root exudates that drive microbiome assembly. Deciphering how plants modulate the composition and activities of rhizosphere microbiota through root exudate...

Regulation and induction of fungal secondary metabolites: a comprehensive review.

Archives of microbiology
Fungal secondary metabolites (SMs) represent a vast reservoir of bioactive compounds with immense therapeutic, agricultural, and industrial potential. These small molecules, including antibiotics, immunosuppressants, and anticancer agents, are synthe...

NLP-like deep learning aided in identification and validation of thiosulfinate tolerance clusters in diverse bacteria.

mSphere
Allicin tolerance () clusters in phytopathogenic bacteria, which provide resistance to thiosulfinates like allicin, are challenging to find using conventional approaches due to their varied architecture and the paradox of being vertically maintained ...

Machine learning uncovers the transcriptional regulatory network for the production host Streptomyces albidoflavus.

Cell reports
Streptomyces albidoflavus is a widely used strain for natural product discovery and production through heterologous biosynthetic gene clusters (BGCs). However, the transcriptional regulatory network (TRN) and its impact on secondary metabolism remain...

CSEL-BGC: A Bioinformatics Framework Integrating Machine Learning for Defining the Biosynthetic Evolutionary Landscape of Uncharacterized Antibacterial Natural Products.

Interdisciplinary sciences, computational life sciences
The sluggish pace of new antibacterial drug development reflects a vulnerability in the face of the current severe threat posed by bacterial resistance. Microbial natural products (NPs), as a reservoir of immense chemical potential, have emerged as t...

Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Streptomyces produces diverse secondary metabolites of biopharmaceutical importance, yet the rate of biosynthesis of these metabolites is often hampered by complex transcriptional regulation. Therefore, a fundamental understanding of transcriptional ...

Deep Learning to Predict the Biosynthetic Gene Clusters in Bacterial Genomes.

Journal of molecular biology
Biosynthetic gene clusters (BGCs) in bacterial genomes code for important small molecules and secondary metabolites. Based on the validated BGCs and the corresponding sequences of protein family domains (Pfams), Pfam functions and clan information, w...