Taxonomic profiling of microbial communities is essential to model microbial interactions and inform habitat conservation. This work develops approaches in constructing training/testing data sets from publicly available marine metagenomes and evaluat...
IEEE journal of biomedical and health informatics
Sep 6, 2023
Deep neural network (DNN) approaches have shown remarkable progress in automatic Chest X-rays classification. However, existing methods use a training scheme that simultaneously trains all abnormalities without considering their learning priority. In...
The large amount of training samples required to develop a deep learning brain injury model demands enormous computational resources. Here, we study how a transformer neural network (TNN) of high accuracy can be used to efficiently generate pretraini...
Computer methods in biomechanics and biomedical engineering
Aug 22, 2023
The human stomach is a complex organ. Its role is to degrade food particles by using mechanical forces and chemical reactions in order to release nutrients. All ingested items, including our nutrition, should first pass through the stomach, making it...
Natural astaxanthin is synthesized by diverse organisms including: bacteria, fungi, microalgae, and plants involving complex cellular processes, which depend on numerous interrelated parameters. Nonetheless, existing knowledge regarding astaxanthin b...
Computer methods in biomechanics and biomedical engineering
Jun 23, 2023
In this article, we analyze the dynamics of the non-linear tumor-immune delayed (TID) model illustrating the interaction among tumor cells and the immune system (cytotoxic T lymphocytes, T helper cells), where the delays portray the times required fo...
Mechanistic models have been used for centuries to describe complex interconnected processes, including biological ones. As the scope of these models has widened, so have their computational demands. This complexity can limit their suitability when r...
Journal of the Royal Society, Interface
Apr 19, 2023
Increasing fungicide dose tends to lead to better short-term control of plant diseases. However, high doses select more rapidly for fungicide resistant strains, reducing long-term disease control. When resistance is qualitative and complete-i.e. resi...
Oral medicines represent the largest pharmaceutical market area. To achieve a therapeutic effect, a drug must penetrate the intestinal walls, the main absorption site for orally delivered active pharmaceutical ingredients (APIs). Indeed, predicting d...
Progress in biophysics and molecular biology
Apr 15, 2023
The constrained disorder principle (CDP) defines systems based on their degree of disorder bounded by dynamic boundaries. The principle explains stochasticity in living and non-living systems. Denis Noble described the importance of stochasticity in ...
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