AIMC Topic: Open Reading Frames

Clear Filters Showing 21 to 24 of 24 articles

OCCAM: prediction of small ORFs in bacterial genomes by means of a target-decoy database approach and machine learning techniques.

Database : the journal of biological databases and curation Jan 1, 2020
Small open reading frames (ORFs) have been systematically disregarded by automatic genome annotation. The difficulty in finding patterns in tiny sequences is the main reason that makes small ORFs to be overlooked by computational procedures. However,...
Machine Learning Algorithms Proteins Genome, Bacterial Open Reading Frames
View on PubMed DOI

LncRNAnet: long non-coding RNA identification using deep learning.

Bioinformatics (Oxford, England) Nov 15, 2018
MOTIVATION: Long non-coding RNAs (lncRNAs) are important regulatory elements in biological processes. LncRNAs share similar sequence characteristics with messenger RNAs, but they play completely different roles, thus providing novel insights for biol...
Humans Deep Learning Databases, Genetic RNA, Long Noncoding High-Throughput Nucleotide Sequencing Open Reading Frames
View on PubMed DOI

A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential.

Nucleic acids research Sep 19, 2018
The current deluge of newly identified RNA transcripts presents a singular opportunity for improved assessment of coding potential, a cornerstone of genome annotation, and for machine-driven discovery of biological knowledge. While traditional, featu...
Humans Neural Networks, Computer Machine Learning Reproducibility of Results Computational Biology RNA, Messenger Sequence Analysis, RNA RNA, Long Noncoding Base Sequence Protein Biosynthesis Open Reading Frames
View on PubMed DOI

TITER: predicting translation initiation sites by deep learning.

Bioinformatics (Oxford, England) Jul 15, 2017
MOTIVATION: Translation initiation is a key step in the regulation of gene expression. In addition to the annotated translation initiation sites (TISs), the translation process may also start at multiple alternative TISs (including both AUG and non-A...
Humans Neural Networks, Computer Machine Learning Software Animals Mice Computational Biology Models, Genetic Open Reading Frames Peptide Chain Initiation, Translational Codon, Initiator
View on PubMed DOI
Popular Topics
Recent Journals