AIMC Topic: Phylogeny
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Too Many False Targets for MicroRNAs: Challenges and Pitfalls in Prediction of miRNA Targets and Their Gene Ontology in Model and Non-model Organisms.
BioEssays : news and reviews in molecular, cellular and developmental biology
Apr 1, 2019
Short ("seed") or extended base pairing between microRNAs (miRNAs) and their target RNAs enables post-transcriptional silencing in many organisms. These interactions allow the computational prediction of potential targets. In model organisms, predict...
Cranial Nerves: Phylogeny and Ontogeny.
Anatomical record (Hoboken, N.J. : 2007)
Mar 1, 2019
This Special Issue, entitled "Cranial Nerves: phylogeny, ontogeny, morphology and clinical significance," has been divided into two consecutive volumes. We present here the first volume, devoted to phylogeny and ontogeny. Articles in this volume exam...
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations.
Bioinformatics (Oxford, England)
Feb 1, 2019
SUMMARY: TreeGrafter is a new software tool for annotating protein sequences using pre-annotated phylogenetic trees. Currently, the tool provides annotations to Gene Ontology (GO) terms, and PANTHER family and subfamily. The approach is generalizable...
Phylogenomics and Infectious Potential of Avian Avulaviruses Species-Type 1 Isolated from Healthy Green-Winged Teal () from a Wetland Sanctuary of Indus River.
Avian diseases
Dec 1, 2018
Given the importance of (AAvVs) in commercial poultry, continuous monitoring and surveillance in natural reservoirs (waterfowls) is imperative. Here, we report full genomic and biologic characterization of two virulent AAvVs isolated from apparently...
Overview of the Biological Activities of a Methanol Extract from Wild Red Belt Conk, Fomitopsis pinicola (Agaricomycetes), Fruiting Bodies from Central Italy.
International journal of medicinal mushrooms
Jan 1, 2018
Fomitopsis pinicola (Sw.) P. Karst. (Fomitopsidaceae) is a medicinal mushroom with a variety of healthy properties. In this study we tested the radical scavenging activity and antimicrobial and anticancer potential of methanol extracts of F. pinicola...
HT29 Cells
Free Radical Scavengers
Fruiting Bodies, Fungal
Coriolaceae
Cell Proliferation
Biphenyl Compounds
Apoptosis
Picrates
Cell Survival
Humans
Chemical Fractionation
Antineoplastic Agents
Phylogeny
Methanol
Flavonoids
Microbial Sensitivity Tests
Agaricales
Phenols
THP-1 Cells
Antifungal Agents
Computer-Aided Diagnosis of Lung Nodules in Computed Tomography by Using Phylogenetic Diversity, Genetic Algorithm, and SVM.
Journal of digital imaging
Dec 1, 2017
Lung cancer is pointed as the major cause of death among patients with cancer throughout the world. This work is intended to develop a methodology for diagnosis of lung nodules using images from the Image Database Consortium and Image Database Resour...
T-GOWler: Discovering Generalized Process Models Within Texts.
Journal of computational biology : a journal of computational molecular cell biology
Aug 1, 2017
Contemporary workflow management systems are driven by explicit process models specifying the interdependencies between tasks. Creating these models is a challenging and time-consuming task. Existing approaches to mining concrete workflows into model...
The Vision and Challenges of the Gene Ontology.
Methods in molecular biology (Clifton, N.J.)
Jan 1, 2017
The overarching goal of the Gene Ontology (GO) Consortium is to provide researchers in biology and biomedicine with all current functional information concerning genes and the cellular context under which these occur. When the GO was started in the 1...
Computational Methods for Annotation Transfers from Sequence.
Methods in molecular biology (Clifton, N.J.)
Jan 1, 2017
Surveys of public sequence resources show that experimentally supported functional information is still completely missing for a considerable fraction of known proteins and is clearly incomplete for an even larger portion. Bioinformatics methods have...
[Alkaline-adapted beta-mannanase of Bacillus pumilus: gene heterologous expression and enzyme characterization].
Wei sheng wu xue bao = Acta microbiologica Sinica
Nov 4, 2015
OBJECTIVE: We expressed a novel alkaline-adapted beta-mannanase gene and characterized the enzyme for potential industrial applications.
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