AIMC Topic: Plant Breeding

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Precise genome editing process and its applications in plants driven by AI.

Functional & integrative genomics
Genome editing technologies have emerged as the keystone of biotechnological research, enabling precise gene modification. The field has evolved rapidly through revolutionary advancements, transitioning from early explorations to the breakthrough of ...

Post-composing ontology terms for efficient phenotyping in plant breeding.

Database : the journal of biological databases and curation
Ontologies are widely used in databases to standardize data, improving data quality, integration, and ease of comparison. Within ontologies tailored to diverse use cases, post-composing user-defined terms reconciles the demands for standardization on...

WheatGP, a genomic prediction method based on CNN and LSTM.

Briefings in bioinformatics
Wheat plays a crucial role in ensuring food security. However, its complex genetic structure and trait variation pose significant challenges for breeding superior varieties. In this study, a genomic prediction method for wheat (WheatGP) is proposed. ...

Integration of machine learning and genome-wide association study to explore the genomic prediction accuracy of agronomic trait in oats (Avena sativa L.).

The plant genome
Machine learning (ML) has garnered significant attention for its potential to enhance the accuracy of genomic predictions (GPs) in various economic crops with the use of complete genomic information. Genome-wide association studies (GWAS) are widely ...

Tasselyzer, a machine learning method to quantify maize anther exertion, based on PlantCV.

The Plant journal : for cell and molecular biology
Maize anthers emerge from male-only florets, a process that involves complex genetic programming and is affected by environmental factors. Quantifying anther exertion provides a key indicator of male fertility; however, traditional manual scoring met...

SoyDNGP: a web-accessible deep learning framework for genomic prediction in soybean breeding.

Briefings in bioinformatics
Soybean is a globally significant crop, playing a vital role in human nutrition and agriculture. Its complex genetic structure and wide trait variation, however, pose challenges for breeders and researchers aiming to optimize its yield and quality. A...

Multi-modal deep learning improves grain yield prediction in wheat breeding by fusing genomics and phenomics.

Bioinformatics (Oxford, England)
MOTIVATION: Developing new crop varieties with superior performance is highly important to ensure robust and sustainable global food security. The speed of variety development is limited by long field cycles and advanced generation selections in plan...

Multimodal deep learning methods enhance genomic prediction of wheat breeding.

G3 (Bethesda, Md.)
While several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes in plant breeding research, few methods have linked genomics and phenomics (imaging). Deep ...

Integrating a crop growth model and radiative transfer model to improve estimation of crop traits based on deep learning.

Journal of experimental botany
A major challenge for the estimation of crop traits (biophysical variables) from canopy reflectance is the creation of a high-quality training dataset. To address this problem, this research investigated a conceptual framework by integrating a crop g...