AIMC Topic: Protein Isoforms

Clear Filters Showing 21 to 26 of 26 articles

Deep-Learning Uncovers certain CCM Isoforms as Transcription Factors.

Frontiers in bioscience (Landmark edition)
BACKGROUND: Cerebral Cavernous Malformations (CCMs) are brain vascular abnormalities associated with an increased risk of hemorrhagic strokes. Familial CCMs result from autosomal dominant inheritance involving three genes: (), (), and (). CCM1 and...

AI-Assisted Processing Pipeline to Boost Protein Isoform Detection.

Methods in molecular biology (Clifton, N.J.)
Proteomics, the study of proteins within biological systems, has seen remarkable advancements in recent years, with protein isoform detection emerging as one of the next major frontiers. One of the primary challenges is achieving the necessary peptid...

IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions.

Bioinformatics (Oxford, England)
MOTIVATION: A single gene may yield several isoforms with different functions through alternative splicing. Continuous efforts are devoted to developing machine-learning methods to predict isoform functions. However, existing methods do not consider ...

Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation.

Nucleic acids research
As the most pervasive epigenetic mark present on mRNA and lncRNA, N6-methyladenosine (m6A) RNA methylation regulates all stages of RNA life in various biological processes and disease mechanisms. Computational methods for deciphering RNA modification...

Uncovering tissue-specific binding features from differential deep learning.

Nucleic acids research
Transcription factors (TFs) can bind DNA in a cooperative manner, enabling a mutual increase in occupancy. Through this type of interaction, alternative binding sites can be preferentially bound in different tissues to regulate tissue-specific expres...

DeepIsoFun: a deep domain adaptation approach to predict isoform functions.

Bioinformatics (Oxford, England)
MOTIVATION: Isoforms are mRNAs produced from the same gene locus by alternative splicing and may have different functions. Although gene functions have been studied extensively, little is known about the specific functions of isoforms. Recently, some...