AI Medical Compendium Topic

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Semi-Automated Data Curation from Biomedical Literature.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Data curation is a bottleneck for many informatics pipelines. A specific example of this is aggregating data from preclinical studies to identify novel genetic pathways for atherosclerosis in humans. This requires extracting data from published mouse...

Exploring a deep learning neural architecture for closed Literature-based discovery.

Journal of biomedical informatics
Scientific literature presents a wealth of information yet to be explored. As the number of researchers increase with each passing year and publications are released, this contributes to an era where specialized fields of research are becoming more p...

Creating an ignorance-base: Exploring known unknowns in the scientific literature.

Journal of biomedical informatics
BACKGROUND: Scientific discovery progresses by exploring new and uncharted territory. More specifically, it advances by a process of transforming unknown unknowns first into known unknowns, and then into knowns. Over the last few decades, researchers...

Few-shot learning for medical text: A review of advances, trends, and opportunities.

Journal of biomedical informatics
BACKGROUND: Few-shot learning (FSL) is a class of machine learning methods that require small numbers of labeled instances for training. With many medical topics having limited annotated text-based data in practical settings, FSL-based natural langua...

Semantically enabling clinical decision support recommendations.

Journal of biomedical semantics
BACKGROUND: Clinical decision support systems have been widely deployed to guide healthcare decisions on patient diagnosis, treatment choices, and patient management through evidence-based recommendations. These recommendations are typically derived ...

A comparison of machine learning methods to find clinical trials for inclusion in new systematic reviews from their PROSPERO registrations prior to searching and screening.

Research synthesis methods
Searching for trials is a key task in systematic reviews and a focus of automation. Previous approaches required knowing examples of relevant trials in advance, and most methods are focused on published trial articles. To complement existing tools, w...