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Studies in health technology and informatics
Jan 25, 2024
Automatic extraction of relations between drugs/chemicals and proteins from ever-growing biomedical literature is required to build up-to-date knowledge bases in biomedicine. To promote the development of automated methods, BioCreative-VII organized ...
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Jan 1, 2024
The quickly-expanding nature of published medical literature makes it challenging for clinicians and researchers to keep up with and summarize recent, relevant findings in a timely manner. While several closed-source summarization tools based on larg...
Studies in health technology and informatics
May 18, 2023
Many concepts in the medical literature are named after persons. Frequent ambiguities and spelling varieties, however, complicate the automatic recognition of such eponyms with natural language processing (NLP) tools. Recently developed methods inclu...
Bioinformatics (Oxford, England)
May 4, 2023
MOTIVATION: Biomedical named entity recognition (BioNER) seeks to automatically recognize biomedical entities in natural language text, serving as a necessary foundation for downstream text mining tasks and applications such as information extraction...
Bioinformatics (Oxford, England)
Apr 3, 2023
MOTIVATION: This article describes NEREL-BIO-an annotation scheme and corpus of PubMed abstracts in Russian and smaller number of abstracts in English. NEREL-BIO extends the general domain dataset NEREL by introducing domain-specific entity types. NE...
Bioinformatics (Oxford, England)
Mar 1, 2023
MOTIVATION: Language models pre-trained on biomedical corpora, such as BioBERT, have recently shown promising results on downstream biomedical tasks. Many existing pre-trained models, on the other hand, are resource-intensive and computationally heav...
Family medicine and community health
Nov 1, 2022
OBJECTIVE: Artificial intelligence (AI) will have a significant impact on healthcare over the coming decade. At the same time, health inequity remains one of the biggest challenges. Primary care is both a driver and a mitigator of health inequities a...
World neurosurgery
Nov 1, 2022
BACKGROUND: Natural language processing (NLP) is a discipline of machine learning concerned with the analysis of language and text. Although NLP has been applied to various forms of clinical text, the applications and utility of NLP in spine surgery ...
Journal of the American Medical Informatics Association : JAMIA
Oct 7, 2022
OBJECTIVE: Plain language in medicine has long been advocated as a way to improve patient understanding and engagement. As the field of Natural Language Processing has progressed, increasingly sophisticated methods have been explored for the automati...
Journal of clinical epidemiology
Oct 1, 2022
BACKGROUND AND OBJECTIVES: Systematic reviews form the basis of evidence-based medicine, but are expensive and time-consuming to produce. To address this burden, we have developed a literature identification system (Pythia) that combines the query fo...