AIMC Topic: SARS-CoV-2

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Neural parameter calibration and uncertainty quantification for epidemic forecasting.

PloS one
The recent COVID-19 pandemic has thrown the importance of accurately forecasting contagion dynamics and learning infection parameters into sharp focus. At the same time, effective policy-making requires knowledge of the uncertainty on such prediction...

Machine Learning Early Detection of SARS-CoV-2 High-Risk Variants.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has evolved many high-risk variants, resulting in repeated COVID-19 waves over the past years. Therefore, accurate early warning of high-risk variants is vital for epidemic prevention a...

A deep drug prediction framework for viral infectious diseases using an optimizer-based ensemble of convolutional neural network: COVID-19 as a case study.

Molecular diversity
The SARS-CoV-2 outbreak highlights the persistent vulnerability of humanity to epidemics and emerging microbial threats, emphasizing the lack of time to develop disease-specific treatments. Therefore, it appears beneficial to utilize existing resourc...

Less is More: Selective reduction of CT data for self-supervised pre-training of deep learning models with contrastive learning improves downstream classification performance.

Computers in biology and medicine
BACKGROUND: Self-supervised pre-training of deep learning models with contrastive learning is a widely used technique in image analysis. Current findings indicate a strong potential for contrastive pre-training on medical images. However, further res...

Evaluating Explainable Artificial Intelligence (XAI) techniques in chest radiology imaging through a human-centered Lens.

PloS one
The field of radiology imaging has experienced a remarkable increase in using of deep learning (DL) algorithms to support diagnostic and treatment decisions. This rise has led to the development of Explainable AI (XAI) system to improve the transpare...

TDFFM: Transformer and Deep Forest Fusion Model for Predicting Coronavirus 3C-Like Protease Cleavage Sites.

IEEE/ACM transactions on computational biology and bioinformatics
COVID-19, caused by the highly contagious SARS-CoV-2 virus, is distinguished by its positive-sense, single-stranded RNA genome. A thorough understanding of SARS-CoV-2 pathogenesis is crucial for halting its proliferation. Notably, the 3C-like proteas...

DeepCOVIDNet-CXR: deep learning strategies for identifying COVID-19 on enhanced chest X-rays.

Biomedizinische Technik. Biomedical engineering
OBJECTIVES: COVID-19 is one of the recent major epidemics, which accelerates its mortality and prevalence worldwide. Most literature on chest X-ray-based COVID-19 analysis has focused on multi-case classification (COVID-19, pneumonia, and normal) by ...

Perceived Impact of COVID-19 in an Underserved Community: A Natural Language Processing Approach.

Journal of advanced nursing
AIM: To utilise natural language processing (NLP) to analyse interviews about the impact of COVID-19 in underserved communities and to compare it to traditional thematic analysis in a small subset of interviews.

Intelligent computing framework to analyze the transmission risk of COVID-19: Meyer wavelet artificial neural networks.

Computational biology and chemistry
The optimum control methods for the epidemiology of the COVID-19 model are acknowledged using a novel advanced intelligent computing infrastructure that joins artificial neural networks with unsupervised learning-based optimizers i.e., Genetic Algori...

Using random forest and biomarkers for differentiating COVID-19 and Mycoplasma pneumoniae infections.

Scientific reports
The COVID-19 pandemic has underscored the critical need for precise diagnostic methods to distinguish between similar respiratory infections, such as COVID-19 and Mycoplasma pneumoniae (MP). Identifying key biomarkers and utilizing machine learning t...