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Terminology as Topic

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Term Candidate Generation to Enrich Clinical Terminologies with Large Language Models.

Studies in health technology and informatics
Annotated language resources derived from clinical routine documentation form an intriguing asset for secondary use case scenarios. In this investigation, we report on how such a resource can be leveraged to identify additional term candidates for a ...

Active Learning Pipeline to Identify Candidate Terms for a CDSS Ontology.

Studies in health technology and informatics
Ontology is essential for achieving health information and information technology application interoperability in the biomedical fields and beyond. Traditionally, ontology construction is carried out manually by human domain experts (HDE). Here, we e...

Evaluation of Machine Translation Accuracy Focused on the Adverse Event Terminology for Medical Devices.

Studies in health technology and informatics
The purpose of this study was to evaluate the accuracy of deep neural machine translation focused on medical device adverse event terminology. 10 models were obtained, and their English-to-Japanese translation accuracy was evaluated using quantitativ...

Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy.

Nucleic acids research
Fungal taxonomy is a complex and rapidly changing subject, which makes proper naming of fungi challenging for taxonomists. A registration platform with a standardized and information-integrated database is a powerful tool for efficient research on fu...

A NLP Pipeline for the Automatic Extraction of Microorganisms Names from Microbiological Notes.

Studies in health technology and informatics
According to the "Istituto Superiore di Sanita'" (ISS), hospital infections are the most frequent and serious complication of health care. This constitutes a real health emergency which requires incisive and joint action at all levels of the local an...

The Human Phenotype Ontology in 2021.

Nucleic acids research
The Human Phenotype Ontology (HPO, https://hpo.jax.org) was launched in 2008 to provide a comprehensive logical standard to describe and computationally analyze phenotypic abnormalities found in human disease. The HPO is now a worldwide standard for ...

PheMap: a multi-resource knowledge base for high-throughput phenotyping within electronic health records.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Developing algorithms to extract phenotypes from electronic health records (EHRs) can be challenging and time-consuming. We developed PheMap, a high-throughput phenotyping approach that leverages multiple independent, online resources to s...

Use of word and graph embedding to measure semantic relatedness between Unified Medical Language System concepts.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: The study sought to explore the use of deep learning techniques to measure the semantic relatedness between Unified Medical Language System (UMLS) concepts.

Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: We sought to assess the need for additional coverage of dietary supplements (DS) in the Unified Medical Language System (UMLS) by investigating (1) the overlap between the integrated DIetary Supplements Knowledge base (iDISK) DS ingredient...