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Named Entity Recognition in Chinese Clinical Text Using Deep Neural Network.

Studies in health technology and informatics
Rapid growth in electronic health records (EHRs) use has led to an unprecedented expansion of available clinical data in electronic formats. However, much of the important healthcare information is locked in the narrative documents. Therefore Natural...

Automatically Expanding the Synonym Set of SNOMED CT using Wikipedia.

Studies in health technology and informatics
Clinical terminologies and ontologies are often used in natural language processing/understanding tasks as a method for semantically tagging text. One ontology commonly used for this task is SNOMED CT. Natural language is rich and varied: many differ...

Indexing Publicly Available Health Data with Medical Subject Headings (MeSH): An Evaluation of Term Coverage.

Studies in health technology and informatics
As part of the Open Government Initiative, the United States federal government published datasets to increase collaboration, transparency, consumer participation, and research, and are available online at HealthData.gov. Currently, HealthData.gov do...

An Ontology-Based Clinical Decision Support System for the Management of Patients with Multiple Chronic Disorders.

Studies in health technology and informatics
Decision support systems, as means of disseminating clinical practice guidelines, are powerful software that may lead to an improvement of medical practices. However, they are not always efficient and may suffer from limitations among which are lack ...

On Building an Ontological Knowledge Base for Managing Patient Safety Events.

Studies in health technology and informatics
Over the past decade, improving healthcare quality and safety through patient safety event reporting systems has drawn much attention. Unfortunately, such systems are suffering from low data quality, inefficient data entry and ineffective information...

An efficient algorithm for updating regular expression indexes in RDF databases.

International journal of data mining and bioinformatics
The Resource Description Framework (RDF) is widely used for sharing biomedical data, such as gene ontology or the online protein database UniProt. SPARQL is a native query language for RDF, featuring regular expressions in queries for which exact val...

Semi-automated evaluation of biomedical ontologies for the biobanking domain based on competency questions.

Studies in health technology and informatics
BACKGROUND: Biosample collections and biobank information systems have become a key enabler for medical research. Therefore it is important to identify potentially relevant ontologies to semantically enrich information related to the biobanking domai...

Development of text mining based classification of written communication within a telemedical collaborative network.

Studies in health technology and informatics
Chronic diseases like Heart Failure are widespread in the ageing population. Affected patients can be treated with the aid of a disease management program, including a telemedical collaborative network. Evaluation of a currently used system has shown...

Sharing models and tools for processing German clinical texts.

Studies in health technology and informatics
The automatic processing of non-English clinical documents is massively hampered by the lack of publicly available medical language resources for training, testing and evaluating NLP components. We suggest sharing statistical models derived from acce...