AIMC Topic: Terminology as Topic
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An efficient algorithm for updating regular expression indexes in RDF databases.
International journal of data mining and bioinformatics
Jan 1, 2015
The Resource Description Framework (RDF) is widely used for sharing biomedical data, such as gene ontology or the online protein database UniProt. SPARQL is a native query language for RDF, featuring regular expressions in queries for which exact val...
Semi-automated evaluation of biomedical ontologies for the biobanking domain based on competency questions.
Studies in health technology and informatics
Jan 1, 2015
BACKGROUND: Biosample collections and biobank information systems have become a key enabler for medical research. Therefore it is important to identify potentially relevant ontologies to semantically enrich information related to the biobanking domai...
Development of text mining based classification of written communication within a telemedical collaborative network.
Studies in health technology and informatics
Jan 1, 2015
Chronic diseases like Heart Failure are widespread in the ageing population. Affected patients can be treated with the aid of a disease management program, including a telemedical collaborative network. Evaluation of a currently used system has shown...
Standardized mappings--a framework to combine different semantic mappers into a standardized web-API.
Studies in health technology and informatics
Jan 1, 2015
BACKGROUND: Automatic coding of medical terms is an important, but highly complicated and laborious task.
Sharing models and tools for processing German clinical texts.
Studies in health technology and informatics
Jan 1, 2015
The automatic processing of non-English clinical documents is massively hampered by the lack of publicly available medical language resources for training, testing and evaluating NLP components. We suggest sharing statistical models derived from acce...
Acquisition of Character Translation Rules for Supporting SNOMED CT Localizations.
Studies in health technology and informatics
Jan 1, 2015
Translating huge medical terminologies like SNOMED CT is costly and time consuming. We present a methodology that acquires substring substitution rules for single words, based on the known similarity between medical words and their translations, due ...
An ontology for healthcare quality indicators: challenges for semantic interoperability.
Studies in health technology and informatics
Jan 1, 2015
Semantic interoperability, a popular research area for electronic health records, can also be a challenge for quality indicators. We analysed attributes and relationships in a diverse set of over 200 healthcare quality indicators and created a search...
Enrich classifications in psychiatry with textual data: an ontology for psychiatry including social concepts.
Studies in health technology and informatics
Jan 1, 2015
We propose a modular approach to develop an ontology of psychiatry, ONTOPSYCHIA, based on Patient Discharges Summaries (PDS) and divided into three modules (i.e. social, mental disorders and treatments). We decided to take into account the social asp...
Identifying redundant and missing relations in the gene ontology.
Studies in health technology and informatics
Jan 1, 2015
Significant efforts have been undertaken for providing the Gene Ontology (GO) in a computable format as well as for enriching it with logical definitions. Automated approaches can thus be applied to GO for assisting its maintenance and for checking i...
Lessons learned in the generation of biomedical research datasets using Semantic Open Data technologies.
Studies in health technology and informatics
Jan 1, 2015
Biomedical research usually requires combining large volumes of data from multiple heterogeneous sources. Such heterogeneity makes difficult not only the generation of research-oriented dataset but also its exploitation. In recent years, the Open Dat...
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