AIMC Topic: Virus Integration
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DeepHBV: a deep learning model to predict hepatitis B virus (HBV) integration sites.
BMC ecology and evolution
Jul 7, 2021
BACKGROUND: The hepatitis B virus (HBV) is one of the main causes of viral hepatitis and liver cancer. HBV integration is one of the key steps in the virus-promoted malignant transformation.
DeepVISP: Deep Learning for Virus Site Integration Prediction and Motif Discovery.
Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Mar 8, 2021
Approximately 15% of human cancers are estimated to be attributed to viruses. Virus sequences can be integrated into the host genome, leading to genomic instability and carcinogenesis. Here, a new deep convolutional neural network (CNN) model is deve...
DeepHPV: a deep learning model to predict human papillomavirus integration sites.
Briefings in bioinformatics
Jul 20, 2021
Human papillomavirus (HPV) integrating into human genome is the main cause of cervical carcinogenesis. HPV integration selection preference shows strong dependence on local genomic environment. Due to this theory, it is possible to predict HPV integr...
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