AIMC Topic: Biological Ontologies

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Ontology-based automatic identification of public health-related Turkish tweets.

Computers in biology and medicine Feb 4, 2017
Social media analysis, such as the analysis of tweets, is a promising research topic for tracking public health concerns including epidemics. In this paper, we present an ontology-based approach to automatically identify public health-related Turkish...
Consumer Health Information Turkey Information Dissemination Biological Ontologies Information Seeking Behavior Social Media Natural Language Processing Machine Learning Public Health
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SAFE: SPARQL Federation over RDF Data Cubes with Access Control.

Journal of biomedical semantics Feb 1, 2017
BACKGROUND: Several query federation engines have been proposed for accessing public Linked Open Data sources. However, in many domains, resources are sensitive and access to these resources is tightly controlled by stakeholders; consequently, privac...
Software Algorithms Information Storage and Retrieval Humans Biological Ontologies Databases, Factual Confidentiality
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Developing a knowledge base to support the annotation of ultrasound images of ectopic pregnancy.

Journal of biomedical semantics Jan 31, 2017
BACKGROUND: Ectopic pregnancy is a frequent early complication of pregnancy associated with significant rates of morbidly and mortality. The positive diagnosis of this condition is established through transvaginal ultrasound scanning. The timing of d...
Biological Ontologies Pregnancy, Ectopic Ultrasonography Data Mining Pregnancy Female Humans
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Toward a comprehensive drug ontology: extraction of drug-indication relations from diverse information sources.

Journal of biomedical semantics Jan 10, 2017
BACKGROUND: Drug ontologies could help pharmaceutical researchers overcome information overload and speed the pace of drug discovery, thus benefiting the industry and patients alike. Drug-disease relations, specifically drug-indication relations, are...
Biological Ontologies Terminology as Topic Databases, Pharmaceutical
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Automatic query generation using word embeddings for retrieving passages describing experimental methods.

Database : the journal of biological databases and curation Jan 10, 2017
Information regarding the physical interactions among proteins is crucial, since protein-protein interactions (PPIs) are central for many biological processes. The experimental techniques used to verify PPIs are vital for characterizing and assessing...
Data Curation Data Mining Biological Ontologies Proteins Databases, Protein
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An ontological analysis of medical Bayesian indicators of performance.

Journal of biomedical semantics Jan 3, 2017
BACKGROUND: Biomedical ontologies aim at providing the most exhaustive and rigorous representation of reality as described by biomedical sciences. A large part of medical reasoning deals with diagnosis and is essentially probabilistic. It would be an...
Bayes Theorem Biological Ontologies
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Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem.

Journal of biomedical informatics Dec 18, 2016
Interoperability across data sets is a key challenge for quantitative histopathological imaging. There is a need for an ontology that can support effective merging of pathological image data with associated clinical and demographic data. To foster or...
Histology Biological Ontologies Pathology Humans Reproducibility of Results
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Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop.

Journal of biomedical semantics Dec 12, 2016
This special issue covers selected papers from the 18th Bio-Ontologies Special Interest Group meeting and Phenotype Day, which took place at the Intelligent Systems for Molecular Biology (ISMB) conference in Dublin in 2015. The papers presented in th...
Biological Ontologies Phenotype
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Evolvix BEST Names for semantic reproducibility across code2brain interfaces.

Annals of the New York Academy of Sciences Dec 5, 2016
Names in programming are vital for understanding the meaning of code and big data. We define code2brain (C2B) interfaces as maps in compilers and brains between meaning and naming syntax, which help to understand executable code. While working toward...
Software Reproducibility of Results Computational Biology Internet Humans Terminology as Topic Biological Ontologies Software Design Cloud Computing Data Mining Brain-Computer Interfaces Programming Languages
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The Human Phenotype Ontology in 2017.

Nucleic acids research Nov 28, 2016
Deep phenotyping has been defined as the precise and comprehensive analysis of phenotypic abnormalities in which the individual components of the phenotype are observed and described. The three components of the Human Phenotype Ontology (HPO; www.hum...
Biological Ontologies Rare Diseases Computational Biology Genomics Phenotype Software Genetic Association Studies Translational Research, Biomedical Precision Medicine Humans Algorithms
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