Biological psychiatry
Aug 15, 2025
Ontologies are structured frameworks for representing knowledge by systematically defining concepts, categories, and their relationships. While widely adopted in biomedicine, ontologies remain largely absent in mental health research and clinical car...
Studies in health technology and informatics
Aug 7, 2025
The state-of-the-art performance of large language models (LLMs) in medical natural language (NLP) tasks, including medical query answering, summarization of clinical notes, and generation of medical reports has led to the development of a large numb...
Nucleic acids research
Jul 7, 2025
BioPortal (https://bioportal.bioontology.org) is the world's most comprehensive repository of biomedical ontologies. It provides infrastructure for finding, sharing, searching, and utilizing biomedical ontologies. Launched in 2005, BioPortal now incl...
Nucleic acids research
Jul 7, 2025
Biomedical ontologies, such as Gene Ontology (GO), Disease Ontology (DO), and the Human Phenotype Ontology (HPO), have been extensively applied to characterize molecular roles and their semantic relationships in biomedical research and clinical pract...
Journal of biomedical semantics
May 23, 2025
BACKGROUND: Vaccines are crucial for preventing infectious diseases; however, they may also be associated with adverse events (AEs). Conventional analysis of vaccine AEs relies on manual review and assignment of AEs to terms in terminology or ontolog...
Studies in health technology and informatics
May 15, 2025
The FAIR principles have been adopted across scientific disciplines to promote sustainable use of data. Ontologies play a crucial role in facilitating data interoperability and reusability. However, existing ontologies may become outdated or redundan...
Zhongguo zhen jiu = Chinese acupuncture & moxibustion
May 12, 2025
Through the investigation of relevant literature, the concepts, methods, languages and tools of ontology were explored, and the suitable methods and tools for the ontology construction of acupoint anatomy were selected. The current mainstream anatomi...
Bioinformatics (Oxford, England)
May 6, 2025
SUMMARY: The Ontology Lookup Service (OLS) is an open source search engine for ontologies which is used extensively in the bioinformatics and chemistry communities to annotate biological and biomedical data with ontology terms. Recently, there has be...
Chinese medical sciences journal = Chung-kuo i hsueh k'o hsueh tsa chih
Mar 31, 2025
Biomedical big data, characterized by its massive scale, multi-dimensionality, and heterogeneity, offers novel perspectives for disease research, elucidates biological principles, and simultaneously prompts changes in related research methodologies. ...
Database : the journal of biological databases and curation
Mar 21, 2025
Ontologies are widely used in databases to standardize data, improving data quality, integration, and ease of comparison. Within ontologies tailored to diverse use cases, post-composing user-defined terms reconciles the demands for standardization on...