AIMC Topic: Biological Ontologies
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Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Database : the journal of biological databases and curation
Oct 8, 2022
Similar to managing software packages, managing the ontology life cycle involves multiple complex workflows such as preparing releases, continuous quality control checking and dependency management. To manage these processes, a diverse set of tools i...
Matching biomedical ontologies with GCN-based feature propagation.
Mathematical biosciences and engineering : MBE
Jun 9, 2022
With an increasing number of biomedical ontologies being evolved independently, matching these ontologies to solve the interoperability problem has become a critical issue in biomedical applications. Traditional biomedical ontology matching methods a...
Analysis of Causal Relationships in Integrated Ontologies of Diseases, Phenotypes, and Radiological Diagnosis.
Studies in health technology and informatics
Jun 6, 2022
Biomedical ontologies encode knowledge in a form that makes it computable. The current study used the integration of three large biomedical ontologies-the Disease Ontology (DO), Human Phenotype Ontology (HPO), and Radiology Gamuts Ontology (RGO)-to e...
REDIRECT: Mapping Drug Prescriptions and Evidence from Biomedical Literature.
Studies in health technology and informatics
May 25, 2022
To enhance their practice, healthcare professionals need to cross-link various usage recommendations provided by heterogeneous vocabularies that must be retrieved and integrated conjointly. This is the aim of the Knowledge Warehouse / K-Ware platform...
Causal Associations Among Diseases and Imaging Findings in Radiology Reports.
Studies in health technology and informatics
May 25, 2022
This study explored the ability to identify causal relationships between diseases and imaging findings from their co-occurrences in radiology reports. A natural language processing (NLP) system with negative-expression filtering detected positive men...
An Ontology for Cardiothoracic Surgical Education and Clinical Data Analytics.
Studies in health technology and informatics
May 25, 2022
The development of an ontology facilitates the organization of the variety of concepts used to describe different terms in different resources. The proposed ontology will facilitate the study of cardiothoracic surgical education and data analytics in...
Pattern-Based Logical Definitions of Prenatal Disorders Grounded on Dispositions.
Studies in health technology and informatics
May 25, 2022
Biomedical ontologies define concepts having biomedical significance and the semantic relations among them. Developing high-quality and reusable ontologies in the biomedical domain is a challenging task. Pattern-based ontology design is considered a ...
Temporal Medical Knowledge Representation Using Ontologies.
Studies in health technology and informatics
May 25, 2022
Representing temporal information is a recurrent problem for biomedical ontologies. We propose a foundational ontology that combines the so-called three-dimensional and four-dimensional approaches in order to be able to track changes in an individual...
Effective method for detecting error causes from incoherent biological ontologies.
Mathematical biosciences and engineering : MBE
May 19, 2022
Computing the minimal axiom sets (MinAs) for an unsatisfiable class is an important task in incoherent ontology debugging. Ddebugging ontologies based on patterns (DOBP) is a pattern-based debugging method that uses a set of heuristic strategies base...
The Human Disease Ontology 2022 update.
Nucleic acids research
Jan 7, 2022
The Human Disease Ontology (DO) (www.disease-ontology.org) database, has significantly expanded the disease content and enhanced our userbase and website since the DO's 2018 Nucleic Acids Research DATABASE issue paper. Conservatively, based on availa...
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