AIMC Topic: Databases, Genetic

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Classification of imbalanced bioinformatics data by using boundary movement-based ELM.

Bio-medical materials and engineering
To address the imbalanced classification problem emerging in Bioinformatics, a boundary movement-based extreme learning machine (ELM) algorithm called BM-ELM was proposed. BM-ELM tries to firstly explore the prior information about data distribution ...

Adaptive Fuzzy Consensus Clustering Framework for Clustering Analysis of Cancer Data.

IEEE/ACM transactions on computational biology and bioinformatics
Performing clustering analysis is one of the important research topics in cancer discovery using gene expression profiles, which is crucial in facilitating the successful diagnosis and treatment of cancer. While there are quite a number of research w...

Supervised Variational Relevance Learning, An Analytic Geometric Feature Selection with Applications to Omic Datasets.

IEEE/ACM transactions on computational biology and bioinformatics
We introduce Supervised Variational Relevance Learning (Suvrel), a variational method to determine metric tensors to define distance based similarity in pattern classification, inspired in relevance learning. The variational method is applied to a co...

A New Semantic Functional Similarity over Gene Ontology.

IEEE/ACM transactions on computational biology and bioinformatics
Identifying functionally similar or closely related genes and gene products has significant impacts on biological and clinical studies as well as drug discovery. In this paper, we propose an effective and practically useful method measuring both gene...

Named entity recognition and classification in biomedical text using classifier ensemble.

International journal of data mining and bioinformatics
Named Entity Recognition and Classification (NERC) is an important task in information extraction for biomedicine domain. Biomedical Named Entities include mentions of proteins, genes, DNA, RNA, etc. which, in general, have complex structures and are...

Managing changes in distributed biomedical ontologies using hierarchical distributed graph transformation.

International journal of data mining and bioinformatics
The issue of ontology evolution and change management is inadequately addressed by available tools and algorithms, mostly due to the lack of suitable knowledge representation formalisms to deal with temporal abstract notations and the overreliance on...

Identification of hepatocellular carcinoma-related genes with a machine learning and network analysis.

Journal of computational biology : a journal of computational molecular cell biology
Liver cancer is one of the leading causes of cancer mortality worldwide. Hepatocellular carcinoma (HCC) is the main type of liver cancer. We applied a machine learning approach with maximum-relevance-minimum-redundancy (mRMR) algorithm followed by in...