AIMC Topic: Documentation

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Adapting content-based image retrieval techniques for the semantic annotation of medical images.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
The automatic annotation of medical images is a prerequisite for building comprehensive semantic archives that can be used to enhance evidence-based diagnosis, physician education, and biomedical research. Annotation also has important applications i...

Uncovering Hospitalists' Information Needs from Outside Healthcare Facilities in the Context of Health Information Exchange Using Association Rule Learning.

Applied clinical informatics
BACKGROUND: Important barriers to health information exchange (HIE) adoption are clinical workflow disruptions and troubles with the system interface. Prior research suggests that HIE interfaces providing faster access to useful information may stimu...

Human Rights Texts: Converting Human Rights Primary Source Documents into Data.

PloS one
We introduce and make publicly available a large corpus of digitized primary source human rights documents which are published annually by monitoring agencies that include Amnesty International, Human Rights Watch, the Lawyers Committee for Human Rig...

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.

Journal of integrative bioinformatics
The number, size and complexity of computational models of biological systems are growing at an ever increasing pace. It is imperative to build on existing studies by reusing and adapting existing models and parts thereof. The description of the stru...

The CellML Metadata Framework 2.0 Specification.

Journal of integrative bioinformatics
The CellML Metadata Framework 2.0 is a modular framework that describes how semantic annotations should be made about mathematical models encoded in the CellML (www.cellml.org) format, and their elements. In addition to the Core specification, there ...

Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus.

Journal of biomedical informatics
The 2014 i2b2/UTHealth natural language processing shared task featured a track focused on the de-identification of longitudinal medical records. For this track, we de-identified a set of 1304 longitudinal medical records describing 296 patients. Thi...

A Preliminary Study of Clinical Abbreviation Disambiguation in Real Time.

Applied clinical informatics
OBJECTIVE: To save time, healthcare providers frequently use abbreviations while authoring clinical documents. Nevertheless, abbreviations that authors deem unambiguous often confuse other readers, including clinicians, patients, and natural language...

Natural Language Processing for Real-Time Catheter-Associated Urinary Tract Infection Surveillance: Results of a Pilot Implementation Trial.

Infection control and hospital epidemiology
BACKGROUND: Incidence of catheter-associated urinary tract infection (CAUTI) is a quality benchmark. To streamline conventional detection methods, an electronic surveillance system augmented with natural language processing (NLP), which gathers data ...

Annotating risk factors for heart disease in clinical narratives for diabetic patients.

Journal of biomedical informatics
The 2014 i2b2/UTHealth natural language processing shared task featured a track focused on identifying risk factors for heart disease (specifically, Cardiac Artery Disease) in clinical narratives. For this track, we used a "light" annotation paradigm...

TRAL: tandem repeat annotation library.

Bioinformatics (Oxford, England)
MOTIVATION: Currently, more than 40 sequence tandem repeat detectors are published, providing heterogeneous, partly complementary, partly conflicting results.