AIMC Topic: Humans

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Prediction of protein self-interactions using stacked long short-term memory from protein sequences information.

BMC systems biology
BACKGROUND: Self-interacting Proteins (SIPs) plays a critical role in a series of life function in most living cells. Researches on SIPs are important part of molecular biology. Although numerous SIPs data be provided, traditional experimental method...

Predicting tumor cell line response to drug pairs with deep learning.

BMC bioinformatics
BACKGROUND: The National Cancer Institute drug pair screening effort against 60 well-characterized human tumor cell lines (NCI-60) presents an unprecedented resource for modeling combinational drug activity.

Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks.

BMC bioinformatics
BACKGROUND: Real-time analysis of patient data during medical procedures can provide vital diagnostic feedback that significantly improves chances of success. With sensors becoming increasingly fast, frameworks such as Deep Neural Networks are requir...
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Sparse coding of pathology slides compared to transfer learning with deep neural networks.

BMC bioinformatics
BACKGROUND: Histopathology images of tumor biopsies present unique challenges for applying machine learning to the diagnosis and treatment of cancer. The pathology slides are high resolution, often exceeding 1GB, have non-uniform dimensions, and ofte...

Biomedical semantic indexing by deep neural network with multi-task learning.

BMC bioinformatics
BACKGROUND: Biomedical semantic indexing is important for information retrieval and many other research fields in bioinformatics. It annotates biomedical citations with Medical Subject Headings. In face of unbalanced category distribution in the trai...
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Scalable deep text comprehension for Cancer surveillance on high-performance computing.

BMC bioinformatics
BACKGROUND: Deep Learning (DL) has advanced the state-of-the-art capabilities in bioinformatics applications which has resulted in trends of increasingly sophisticated and computationally demanding models trained by larger and larger data sets. This ...

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.

BMC bioinformatics
BACKGROUND: Current multi-petaflop supercomputers are powerful systems, but present challenges when faced with problems requiring large machine learning workflows. Complex algorithms running at system scale, often with different patterns that require...

Deep learning in the cross-time frequency domain for sleep staging from a single-lead electrocardiogram.

Physiological measurement
OBJECTIVE: This study classifies sleep stages from a single lead electrocardiogram (ECG) using beat detection, cardiorespiratory coupling in the time-frequency domain and a deep convolutional neural network (CNN).

Tumor co-segmentation in PET/CT using multi-modality fully convolutional neural network.

Physics in medicine and biology
Automatic tumor segmentation from medical images is an important step for computer-aided cancer diagnosis and treatment. Recently, deep learning has been successfully applied to this task, leading to state-of-the-art performance. However, most of exi...

A Machine Hearing System for Robust Cough Detection Based on a High-Level Representation of Band-Specific Audio Features.

IEEE transactions on bio-medical engineering
UNLABELLED: Cough is a protective reflex conveying information on the state of the respiratory system. Cough assessment has been limited so far to subjective measurement tools or uncomfortable (i.e., non-wearable) cough monitors. This limits the pote...