AIMC Topic: Microscopy, Fluorescence

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Deep learning enables fast, gentle STED microscopy.

Communications biology
STED microscopy is widely used to image subcellular structures with super-resolution. Here, we report that restoring STED images with deep learning can mitigate photobleaching and photodamage by reducing the pixel dwell time by one or two orders of m...

3D surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semisupervised deep learning.

Proceedings of the National Academy of Sciences of the United States of America
Cryo-soft X-ray tomography (cryo-SXT) is a powerful method to investigate the ultrastructure of cells, offering resolution in the tens of nanometer range and strong contrast for membranous structures without requiring labeling or chemical fixation. T...

Single-frame deep-learning super-resolution microscopy for intracellular dynamics imaging.

Nature communications
Single-molecule localization microscopy (SMLM) can be used to resolve subcellular structures and achieve a tenfold improvement in spatial resolution compared to that obtained by conventional fluorescence microscopy. However, the separation of single-...

Enhancing Total Optical Throughput of Microscopy with Deep Learning for Intravital Observation.

Small methods
The significance of performing large-depth dynamic microscopic imaging in vivo for life science research cannot be overstated. However, the optical throughput of the microscope limits the available information per unit of time, i.e., it is difficult ...

Active mesh and neural network pipeline for cell aggregate segmentation.

Biophysical journal
Segmenting cells within cellular aggregates in 3D is a growing challenge in cell biology due to improvements in capacity and accuracy of microscopy techniques. Here, we describe a pipeline to segment images of cell aggregates in 3D. The pipeline comb...

Analyzing Mitochondrial Morphology Through Simulation Supervised Learning.

Journal of visualized experiments : JoVE
The quantitative analysis of subcellular organelles such as mitochondria in cell fluorescence microscopy images is a demanding task because of the inherent challenges in the segmentation of these small and morphologically diverse structures. In this ...

Deep Learning Solution for Quantification of Fluorescence Particles on a Membrane.

Sensors (Basel, Switzerland)
The detection and quantification of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) virus particles in ambient waters using a membrane-based in-gel loop-mediated isothermal amplification (mgLAMP) method can play an important role in larg...

Correlative Fluorescence and Raman Microscopy to Define Mitotic Stages at the Single-Cell Level: Opportunities and Limitations in the AI Era.

Biosensors
Nowadays, morphology and molecular analyses at the single-cell level have a fundamental role in understanding biology better. These methods are utilized for cell phenotyping and in-depth studies of cellular processes, such as mitosis. Fluorescence mi...

Machine learning assisted interferometric structured illumination microscopy for dynamic biological imaging.

Nature communications
Structured Illumination Microscopy, SIM, is one of the most powerful optical imaging methods available to visualize biological environments at subcellular resolution. Its limitations stem from a difficulty of imaging in multiple color channels at onc...

Volumetric imaging of fast cellular dynamics with deep learning enhanced bioluminescence microscopy.

Communications biology
Bioluminescence microscopy is an appealing alternative to fluorescence microscopy, because it does not depend on external illumination, and consequently does neither produce spurious background autofluorescence, nor perturb intrinsically photosensiti...