AIMC Topic: Neoplasms

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A deep learning method to integrate extracelluar miRNA with mRNA for cancer studies.

Bioinformatics (Oxford, England)
MOTIVATION: Extracellular miRNAs (exmiRs) and intracellular mRNAs both can serve as promising biomarkers and therapeutic targets for various diseases. However, exmiR expression data is often noisy, and obtaining intracellular mRNA expression data usu...

Advancing Cancer Prevention through an AI-Based Integration of Traditional and Western Medicine.

Cancer discovery
Traditional Chinese medicine has accumulated a wealth of experiences in individualized cancer prevention and serves as a complement to Western medicine. We propose an artificial intelligence-based integration of traditional and Western medicine as a ...

CACER: Clinical concept Annotations for Cancer Events and Relations.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Clinical notes contain unstructured representations of patient histories, including the relationships between medical problems and prescription drugs. To investigate the relationship between cancer drugs and their associated symptom burden...

A comprehensive review of machine learning techniques for multi-omics data integration: challenges and applications in precision oncology.

Briefings in functional genomics
Multi-omics data play a crucial role in precision medicine, mainly to understand the diverse biological interaction between different omics. Machine learning approaches have been extensively employed in this context over the years. This review aims t...

A multichannel graph neural network based on multisimilarity modality hypergraph contrastive learning for predicting unknown types of cancer biomarkers.

Briefings in bioinformatics
Identifying potential cancer biomarkers is a key task in biomedical research, providing a promising avenue for the diagnosis and treatment of human tumors and cancers. In recent years, several machine learning-based RNA-disease association prediction...

Model ensembling as a tool to form interpretable multi-omic predictors of cancer pharmacosensitivity.

Briefings in bioinformatics
Stratification of patients diagnosed with cancer has become a major goal in personalized oncology. One important aspect is the accurate prediction of the response to various drugs. It is expected that the molecular characteristics of the cancer cells...

Deep contrastive learning for predicting cancer prognosis using gene expression values.

Briefings in bioinformatics
Recent advancements in image classification have demonstrated that contrastive learning (CL) can aid in further learning tasks by acquiring good feature representation from a limited number of data samples. In this paper, we applied CL to tumor trans...

Multi-view learning framework for predicting unknown types of cancer markers via directed graph neural networks fitting regulatory networks.

Briefings in bioinformatics
The discovery of diagnostic and therapeutic biomarkers for complex diseases, especially cancer, has always been a central and long-term challenge in molecular association prediction research, offering promising avenues for advancing the understanding...

Gene expression prediction from histology images via hypergraph neural networks.

Briefings in bioinformatics
Spatial transcriptomics reveals the spatial distribution of genes in complex tissues, providing crucial insights into biological processes, disease mechanisms, and drug development. The prediction of gene expression based on cost-effective histology ...