AIMC Topic: Neural Networks, Computer

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Learning long- and short-term dependencies for improving drug-target binding affinity prediction using transformer and edge contraction pooling.

Journal of bioinformatics and computational biology
The accurate identification of drug-target affinity (DTA) is crucial for advancements in drug discovery and development. Many deep learning-based approaches have been devised to predict drug-target binding affinity accurately, exhibiting notable impr...

Applications of information geometry to spiking neural network activity.

Physical review. E
The space of possible behaviors that complex biological systems may exhibit is unimaginably vast, and these systems often appear to be stochastic, whether due to variable noisy environmental inputs or intrinsically generated chaos. The brain is a pro...

Geometry-complete perceptron networks for 3D molecular graphs.

Bioinformatics (Oxford, England)
MOTIVATION: The field of geometric deep learning has recently had a profound impact on several scientific domains such as protein structure prediction and design, leading to methodological advancements within and outside of the realm of traditional m...

scSemiGCN: boosting cell-type annotation from noise-resistant graph neural networks with extremely limited supervision.

Bioinformatics (Oxford, England)
MOTIVATION: Cell-type annotation is fundamental in revealing cell heterogeneity for single-cell data analysis. Although a host of works have been developed, the low signal-to-noise-ratio single-cell RNA-sequencing data that suffers from batch effects...

Artificial neural networks and deep learning.

American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics

Skin patch based makeup finish assessment technique by deep neural network.

Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI)
BACKGROUND: Skin color and texture play a significant role in influencing impressions. To understand the influence of skin appearance and to develop better makeup products, objective evaluation methods for makeup finish have been explored. This study...

Multi-scale topology and position feature learning and relationship-aware graph reasoning for prediction of drug-related microbes.

Bioinformatics (Oxford, England)
MOTIVATION: The human microbiome may impact the effectiveness of drugs by modulating their activities and toxicities. Predicting candidate microbes for drugs can facilitate the exploration of the therapeutic effects of drugs. Most recent methods conc...

TIMED-Design: flexible and accessible protein sequence design with convolutional neural networks.

Protein engineering, design & selection : PEDS
Sequence design is a crucial step in the process of designing or engineering proteins. Traditionally, physics-based methods have been used to solve for optimal sequences, with the main disadvantages being that they are computationally intensive for t...

[Construction of a back propagation neural network model for predicting urosepsis after flexible ureteroscopic lithotripsy].

Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences
OBJECTIVES: To analyze the association of serum heparin-binding protein (HBP) and C-reactive protein (CRP) levels with urosepsis following flexible ureteroscopic lithotripsy (FURL) and to construct a back propagation neural network prediction model.