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Advancing food security: Rice yield estimation framework using time-series satellite data & machine learning.

PloS one
Timely and accurately estimating rice yields is crucial for supporting food security management, agricultural policy development, and climate change adaptation in rice-producing countries such as Bangladesh. To address this need, this study introduce...

RiceSNP-ABST: a deep learning approach to identify abiotic stress-associated single nucleotide polymorphisms in rice.

Briefings in bioinformatics
Given the adverse effects faced by rice due to abiotic stresses, the precise and rapid identification of single nucleotide polymorphisms (SNPs) associated with abiotic stress traits (ABST-SNPs) in rice is crucial for developing resistant rice varieti...

KPRR: a novel machine learning approach for effectively capturing nonadditive effects in genomic prediction.

Briefings in bioinformatics
Nonadditive genetic effects pose significant challenges to traditional genomic selection methods for quantitative traits. Machine learning approaches, particularly kernel-based methods, offer promising solutions to overcome these limitations. In this...

Phenotype prediction in plants is improved by integrating large-scale transcriptomic datasets.

NAR genomics and bioinformatics
Research on the dynamic expression of genes in plants is important for understanding different biological processes. We used the large amounts of transcriptomic data from various plant sample sources that are publicly available to investigate whether...

Cropformer: An interpretable deep learning framework for crop genomic prediction.

Plant communications
Machine learning and deep learning are extensively employed in genomic selection (GS) to expedite the identification of superior genotypes and accelerate breeding cycles. However, a significant challenge with current data-driven deep learning models ...

Enhancing the estimation of cadmium content in rice leaves by integrating vegetation indices and color indices using machine learning.

Ecotoxicology and environmental safety
Cadmium (Cd) is a heavy metal recognized for its notable biotoxicity. Excessive Cd levels can have detrimental effects on crop growth, development, and yield. Real-time, rapid, and nondestructive monitoring of Cd content in leaves (LCd) is essential ...

Ensemble learning-assisted quantitative identifying influencing factors of cadmium and arsenic concentration in rice grain based multiplexed data.

Journal of hazardous materials
Rapid and accurate prediction of rice Cd (rCd) and rice As (rAs) bioaccumulation are important for assessing the safe utilization of rice. Currently, there is lack of comprehensive and systematic exploration of the factors of rCd and rAs. Herein, ens...

Increased chloroplast occupancy in bundle sheath cells of rice hap3H mutants revealed by Chloro-Count: a new deep learning-based tool.

The New phytologist
There is an increasing demand to boost photosynthesis in rice to increase yield potential. Chloroplasts are the site of photosynthesis, and increasing their number and size is a potential route to elevate photosynthetic activity. Notably, bundle shea...

Integrating Sentinel-1 data and machine learning for effective paddy field monitoring in Cauvery Delta Zone, Tamil Nadu, India.

Environmental monitoring and assessment
Paddy crop mapping is essential for agricultural monitoring, ensuring food security, and enhancing resource allocation. This study observes the Cauvery Delta Zone (CDZ), recognized as the rice bowl of Tamil Nadu and a crucial area for paddy farming i...

Enhanced forecasting of rice price and production in Malaysia using novel multivariate fuzzy time series models.

Scientific reports
A significant portion of the world's population relies on rice as a primary source of nutrition. In Malaysia, rice production began in the early 1960s, which led to the cultivation of the country's most significant food crop up till the present day. ...