AIMC Topic: Phenotype

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Machine learning models for predicting blood pressure phenotypes by combining multiple polygenic risk scores.

Scientific reports
We construct non-linear machine learning (ML) prediction models for systolic and diastolic blood pressure (SBP, DBP) using demographic and clinical variables and polygenic risk scores (PRSs). We developed a two-model ensemble, consisting of a baselin...

Integrating Bioinformatics and Machine Learning for Genomic Prediction in Chickens.

Genes
Genomic prediction plays an increasingly important role in modern animal breeding, with predictive accuracy being a crucial aspect. The classical linear mixed model is gradually unable to accommodate the growing number of target traits and the increa...

Bagging Improves the Performance of Deep Learning-Based Semantic Segmentation with Limited Labeled Images: A Case Study of Crop Segmentation for High-Throughput Plant Phenotyping.

Sensors (Basel, Switzerland)
Advancements in imaging, computer vision, and automation have revolutionized various fields, including field-based high-throughput plant phenotyping (FHTPP). This integration allows for the rapid and accurate measurement of plant traits. Deep Convolu...

Residual networks without pooling layers improve the accuracy of genomic predictions.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Residual neural network genomic selection is the first GS algorithm to reach 35 layers, and its prediction accuracy surpasses previous algorithms. With the decrease in DNA sequencing costs and the development of deep learning, phenotype prediction ac...

TrG2P: A transfer-learning-based tool integrating multi-trait data for accurate prediction of crop yield.

Plant communications
Yield prediction is the primary goal of genomic selection (GS)-assisted crop breeding. Because yield is a complex quantitative trait, making predictions from genotypic data is challenging. Transfer learning can produce an effective model for a target...

Machine Learning Strategies in MicroRNA Research: Bridging Genome to Phenome.

Omics : a journal of integrative biology
MicroRNAs (miRNAs) have emerged as a prominent layer of regulation of gene expression. This article offers the salient and current aspects of machine learning (ML) tools and approaches from genome to phenome in miRNA research. First, we underline tha...

Enhancing genome-wide populus trait prediction through deep convolutional neural networks.

The Plant journal : for cell and molecular biology
As a promising model, genome-based plant breeding has greatly promoted the improvement of agronomic traits. Traditional methods typically adopt linear regression models with clear assumptions, neither obtaining the linkage between phenotype and genot...

Phenome-wide identification of therapeutic genetic targets, leveraging knowledge graphs, graph neural networks, and UK Biobank data.

Science advances
The ongoing expansion of human genomic datasets propels therapeutic target identification; however, extracting gene-disease associations from gene annotations remains challenging. Here, we introduce Mantis-ML 2.0, a framework integrating AstraZeneca'...

Deep learning imaging phenotype can classify metabolic syndrome and is predictive of cardiometabolic disorders.

Journal of translational medicine
BACKGROUND: Cardiometabolic disorders pose significant health risks globally. Metabolic syndrome, characterized by a cluster of potentially reversible metabolic abnormalities, is a known risk factor for these disorders. Early detection and interventi...