AIMC Topic: Publications

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Drug drug interaction extraction from the literature using a recursive neural network.

PloS one Jan 26, 2018
Detecting drug-drug interactions (DDI) is important because information on DDIs can help prevent adverse effects from drug combinations. Since there are many new DDI-related papers published in the biomedical domain, manually extracting DDI informati...
Neural Networks, Computer Support Vector Machine Natural Language Processing Humans Drug-Related Side Effects and Adverse Reactions Data Mining Pharmacokinetics Publications Drug Interactions
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Gene ontology concept recognition using named concept: understanding the various presentations of the gene functions in biomedical literature.

Database : the journal of biological databases and curation Jan 1, 2018
OBJECTIVE: A major challenge in precision medicine is the development of patient-specific genetic biomarkers or drug targets. The firsthand information of the genes associated with the pathologic pathways of interest is buried in the ocean of biomedi...
Machine Learning Algorithms Reproducibility of Results Semantics Biomedical Research Gene Ontology Publications
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Large-scale automated machine reading discovers new cancer-driving mechanisms.

Database : the journal of biological databases and curation Jan 1, 2018
PubMed, a repository and search engine for biomedical literature, now indexes >1 million articles each year. This exceeds the processing capacity of human domain experts, limiting our ability to truly understand many diseases. We present Reach, a sys...
Automation Humans Machine Learning Neoplasms Algorithms Publications
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An attention-based effective neural model for drug-drug interactions extraction.

BMC bioinformatics Oct 10, 2017
BACKGROUND: Drug-drug interactions (DDIs) often bring unexpected side effects. The clinical recognition of DDIs is a crucial issue for both patient safety and healthcare cost control. However, although text-mining-based systems explore various method...
Models, Theoretical Support Vector Machine Publications Neural Networks, Computer Algorithms Drug Interactions Databases as Topic Humans
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Knowledge mapping visualization analysis of the military health and medicine papers published in the web of science over the past 10 years.

Military Medical Research Jul 12, 2017
BACKGROUND: Military medicine is a research field that seeks to solve the medical problems that occur in modern war conditions based on public medicine theory.
Veterans Health Humans Military Medicine Knowledge Bases History, 21st Century Research Publications
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Literature evidence in open targets - a target validation platform.

Journal of biomedical semantics Jun 6, 2017
BACKGROUND: We present the Europe PMC literature component of Open Targets - a target validation platform that integrates various evidence to aid drug target identification and validation. The component identifies target-disease associations in docum...
Data Mining Documentation Molecular Targeted Therapy Biological Ontologies Reproducibility of Results Publications
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Using classification models for the generation of disease-specific medications from biomedical literature and clinical data repository.

Journal of biomedical informatics Apr 20, 2017
OBJECTIVE: Mining disease-specific associations from existing knowledge resources can be useful for building disease-specific ontologies and supporting knowledge-based applications. Many association mining techniques have been exploited. However, the...
Biological Ontologies Machine Learning Disease Periodicals as Topic Data Mining Databases as Topic Humans Publications
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Extracting microRNA-gene relations from biomedical literature using distant supervision.

PloS one Mar 6, 2017
Many biomedical relation extraction approaches are based on supervised machine learning, requiring an annotated corpus. Distant supervision aims at training a classifier by combining a knowledge base with a corpus, reducing the amount of manual effor...
Algorithms MicroRNAs Humans Data Mining Publications Web Browser Supervised Machine Learning
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Improving Endpoint Detection to Support Automated Systematic Reviews.

AMIA ... Annual Symposium proceedings. AMIA Symposium Feb 10, 2017
Authors of biomedical articles use comparison sentences to communicate the findings of a study, and to compare the results of the current study with earlier studies. The Claim Framework defines a comparison claim as a sentence that includes at least ...
Linguistics Animals Support Vector Machine Diabetes Mellitus Humans Review Literature as Topic Meta-Analysis as Topic Natural Language Processing Biomedical Research Publications
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Extractive text summarization system to aid data extraction from full text in systematic review development.

Journal of biomedical informatics Oct 27, 2016
OBJECTIVES: Extracting data from publication reports is a standard process in systematic review (SR) development. However, the data extraction process still relies too much on manual effort which is slow, costly, and subject to human error. In this s...
Machine Learning Publications Language Data Mining Humans Natural Language Processing Systematic Reviews as Topic
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