AIMC Topic: Software

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mACPpred: A Support Vector Machine-Based Meta-Predictor for Identification of Anticancer Peptides.

International journal of molecular sciences
Anticancer peptides (ACPs) are promising therapeutic agents for targeting and killing cancer cells. The accurate prediction of ACPs from given peptide sequences remains as an open problem in the field of immunoinformatics. Recently, machine learning ...

A novel ECG signal compression method using spindle convolutional auto-encoder.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVES: With rapid development of telehealth system and cloud platform, traditional 12-ECG signals with high resolution generate heavy burdens in data storage and transmission. This problem is increasingly addressed with various EC...

End-to-End Differentiable Learning of Protein Structure.

Cell systems
Predicting protein structure from sequence is a central challenge of biochemistry. Co-evolution methods show promise, but an explicit sequence-to-structure map remains elusive. Advances in deep learning that replace complex, human-designed pipelines ...

Viable and necrotic tumor assessment from whole slide images of osteosarcoma using machine-learning and deep-learning models.

PloS one
Pathological estimation of tumor necrosis after chemotherapy is essential for patients with osteosarcoma. This study reports the first fully automated tool to assess viable and necrotic tumor in osteosarcoma, employing advances in histopathology digi...

Trace, Machine Learning of Signal Images for Trace-Sensitive Mass Spectrometry: A Case Study from Single-Cell Metabolomics.

Analytical chemistry
Recent developments in high-resolution mass spectrometry (HRMS) technology enabled ultrasensitive detection of proteins, peptides, and metabolites in limited amounts of samples, even single cells. However, extraction of trace-abundance signals from c...

ECG Multilead Interval Estimation Using Support Vector Machines.

Journal of healthcare engineering
This work reports a multilead interval measurement algorithm for a high-resolution digital electrocardiograph. The software enables off-line ECG processing including detection as well as an accurate multilead interval detection algorithm using sup...

Hybrid model for efficient prediction of poly(A) signals in human genomic DNA.

Methods (San Diego, Calif.)
Polyadenylation signals (PAS) are found in most protein-coding and some non-coding genes in eukaryotes. Their accurate recognition improves understanding gene regulation mechanisms and recognition of the 3'-end of transcribed gene regions where prema...

Artificial intelligence outperforms pulmonologists in the interpretation of pulmonary function tests.

The European respiratory journal
The interpretation of pulmonary function tests (PFTs) to diagnose respiratory diseases is built on expert opinion that relies on the recognition of patterns and the clinical context for detection of specific diseases. In this study, we aimed to explo...

Musculoskeletal design, control, and application of human mimetic humanoid Kenshiro.

Bioinspiration & biomimetics
We have been developing a human mimetic musculoskeletal humanoid called Kenshiro, whose design concept is to thoroughly pursue an unprecedented anatomical fidelity to the human musculoskeletal structure. We believe that research on human mimetic musc...

ML-DSP: Machine Learning with Digital Signal Processing for ultrafast, accurate, and scalable genome classification at all taxonomic levels.

BMC genomics
BACKGROUND: Although software tools abound for the comparison, analysis, identification, and classification of genomic sequences, taxonomic classification remains challenging due to the magnitude of the datasets and the intrinsic problems associated ...